Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k10
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   2.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.9  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 210 CLNGTSRYYARRRMLLRTQLVP 145
           CL  T  YY++      TQ +P
Sbjct: 379 CLGSTETYYSKHNTQQFTQYIP 400


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 118 NSYDGYDEIPISTLMFTLVNVIE 50
           N  D Y+E  I T M  L+NV++
Sbjct: 86  NKNDKYEENTILTTMPLLINVVK 108


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 319 LKHNQFRNLTLIRRQ*ERYVIRTLSN 396
           L  + +RNLT +RR+ E  V++   N
Sbjct: 214 LMGSPYRNLTFVRREGEFSVLQVSFN 239


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 370 RYVIRTLSNEVGRYNFV 420
           RY +  LSN++G  ++V
Sbjct: 268 RYYLERLSNDMGEVSYV 284


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 370 RYVIRTLSNEVGRYNFV 420
           RY +  LSN++G  ++V
Sbjct: 268 RYYLERLSNDMGEVSYV 284


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 159 YEVTSGASHNTDSSHSSTRIQLNN 230
           Y++ +   H    SH S  I+LN+
Sbjct: 168 YDILNCTIHIASWSHGSNEIKLNS 191


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 18  DLKKPLLHSTDSITLTRVNMSVDIGISSYP 107
           D K+  LHS  S  L R++   D  +  YP
Sbjct: 696 DDKEGYLHSVVSGALDRLHYETDPCVRYYP 725


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 420 YKIVSTNFVRQRSNHVTFLLPTYKSQ 343
           Y I S+  V Q   H+T  +  YK+Q
Sbjct: 899 YSISSSPDVHQGQIHLTVAVVQYKTQ 924


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,166
Number of Sequences: 438
Number of extensions: 2875
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)