Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k07
         (639 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles ...   202   1e-53
AJ973471-1|CAJ01518.1|  122|Anopheles gambiae hypothetical prote...    24   4.7  
AJ697731-1|CAG26924.1|  122|Anopheles gambiae putative chemosens...    24   4.7  
AJ697730-1|CAG26923.1|  122|Anopheles gambiae putative chemosens...    24   4.7  
AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding pr...    23   6.2  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   8.2  

>U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S8 mRNA, complete cds.
           ).
          Length = 135

 Score =  202 bits (492), Expect = 1e-53
 Identities = 92/130 (70%), Positives = 114/130 (87%)
 Frame = -3

Query: 400 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAE 221
           RK RIIDVVYNASNNEL+RTKTLVKNAI+V+DA+PFRQWYESHY LPLG+K+  +L   E
Sbjct: 3   RKARIIDVVYNASNNELIRTKTLVKNAIIVIDASPFRQWYESHYLLPLGKKR--ELKAGE 60

Query: 220 EAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 41
           E +++KKR++   RKY+ RQ+ AK++ A+EEQF+ GRLLAC++SRPGQ GRADGYILEGK
Sbjct: 61  EDVLSKKRTKSNLRKYVKRQKNAKIDPAVEEQFNAGRLLACISSRPGQVGRADGYILEGK 120

Query: 40  ELEFYLRKIQ 11
           ELEFYL+KI+
Sbjct: 121 ELEFYLKKIK 130


>AJ973471-1|CAJ01518.1|  122|Anopheles gambiae hypothetical protein
           protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 311 YNNCILDKGLCTHQ 352
           Y  C+LDKG CT +
Sbjct: 44  YLKCLLDKGPCTQE 57


>AJ697731-1|CAG26924.1|  122|Anopheles gambiae putative chemosensory
           protein CSP2 protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 311 YNNCILDKGLCTHQ 352
           Y  C+LDKG CT +
Sbjct: 44  YLKCLLDKGPCTQE 57


>AJ697730-1|CAG26923.1|  122|Anopheles gambiae putative chemosensory
           protein CSP1 protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 311 YNNCILDKGLCTHQ 352
           Y  C+LDKG CT +
Sbjct: 44  YLKCLLDKGPCTQE 57


>AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding
           protein AgamOBP45 protein.
          Length = 356

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
 Frame = +1

Query: 13  GSFLDRTRVLCLLRCNHRRD---HTDLG 87
           GSF D     CLLRC   R    H D G
Sbjct: 187 GSFPDAPETRCLLRCFFLRTGVFHVDTG 214


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 522 LQTPGSALSESTPFVHVVEILSTV 451
           + TP  A++ STPF+    +LS +
Sbjct: 527 VNTPAGAINMSTPFIDSEIVLSAL 550


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,799
Number of Sequences: 2352
Number of extensions: 13629
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)