Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k06
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   198   1e-51
AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or cys...    28   4.4  
AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protei...    28   4.4  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  198 bits (484), Expect = 1e-51
 Identities = 89/128 (69%), Positives = 110/128 (85%)
 Frame = -1

Query: 442 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 263
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 262 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 83
           EE+ +KI+TIM NP QYKIP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR H
Sbjct: 61  EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120

Query: 82  RGMRHXLG 59
           RG+RH  G
Sbjct: 121 RGLRHYWG 128



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = -2

Query: 99  RRFALTEGCDIXWGLRVRGQHTKTTGRRGR 10
           ++  L  G    WGLRVRGQHTKTTGR+GR
Sbjct: 115 KKIRLHRGLRHYWGLRVRGQHTKTTGRKGR 144


>AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 362

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = -1

Query: 496 FFVSPVLCLGTLVRNL----TKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGR 329
           F V+P   L T ++N       + L  P   Q I   +NT  +GK K +    +IK    
Sbjct: 95  FTVNPTF-LSTALKNYGADAKSLDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIA 153

Query: 328 RYSNIVLKKADIDLDKRAGECTEEE 254
              N +  KAD D DK  G    E+
Sbjct: 154 LLINSIYFKADWD-DKFDGMSVSEQ 177


>AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protein 3
           protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = -1

Query: 496 FFVSPVLCLGTLVRNL----TKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGR 329
           F V+P   L T ++N       + L  P   Q I   +NT  +GK K +    +IK    
Sbjct: 95  FTVNPTF-LSTALKNYGADAKSLDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIA 153

Query: 328 RYSNIVLKKADIDLDKRAGECTEEE 254
              N +  KAD D DK  G    E+
Sbjct: 154 LLINSIYFKADWD-DKFDGMSVSEQ 177


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 226 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 110
           NP  YK+ D++ N+  +++  K + +L S++L  K +++L
Sbjct: 40  NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 359  CDDGYQRCWPEVLQHCS 309
            C + YQ CWP +L  CS
Sbjct: 1512 CREYYQICWPPILLACS 1528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,940,116
Number of Sequences: 27780
Number of extensions: 252211
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)