Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j20
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0089 - 27619053-27620138                                         30   1.1  
12_02_0235 + 16079042-16079410                                         29   2.0  
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515...    29   2.0  
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538...    29   3.4  
01_06_0078 + 26223797-26223803,26224000-26224278,26224391-262246...    29   3.4  
05_04_0045 - 17477470-17477570,17477753-17477774,17477942-174780...    28   4.6  
01_01_0601 - 4476261-4476728                                           27   8.0  

>05_07_0089 - 27619053-27620138
          Length = 361

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 371 KASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERRPC 246
           +A F C   S+C    ++ T   N+  V+ +G  KG    PC
Sbjct: 24  RALFSCGIFSTCTHPALSPTATPNNNVVAGMGGAKGGSGTPC 65


>12_02_0235 + 16079042-16079410
          Length = 122

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 377 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERR 252
           +RKA  G D      +  MAA  +G S  V  +G H+ AERR
Sbjct: 40  QRKAGTGGDGSE---KTMMAARAEGGSNWVEVIGCHEKAERR 78


>02_01_0690 -
           5152224-5152386,5152490-5152687,5152815-5153014,
           5153122-5153223,5153414-5153550,5153688-5153798,
           5156092-5156344,5157954-5158052,5158449-5158739
          Length = 517

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 298 EFPSPVAAIRFRQHDETSSQPKLAFRRQKLEIQCAVFALFH 420
           E PS   A RF+QH   S  P   FR+  +EI+  ++   H
Sbjct: 301 ELPSTFKAFRFQQH-RWSCGPANLFRKMLMEIKVTIWKKIH 340


>08_01_0612 +
           5378190-5378251,5378926-5379244,5379381-5379671,
           5380520-5380768,5380843-5380967,5381487-5381585,
           5381668-5382352
          Length = 609

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 292 ASRLSGHIKVPNGVRVEKLRPNMSVYGTVQLPYDKI 185
           AS + G  K    ++ + L+PN+ VYGT+   Y K+
Sbjct: 400 ASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKL 435


>01_06_0078 +
           26223797-26223803,26224000-26224278,26224391-26224609,
           26226846-26226917,26228073-26228221,26228859-26229135,
           26230922-26231187
          Length = 422

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -3

Query: 391 SPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMSVYG 212
           SP F  E+ V V  T H   E  W   + G+     L+GH    N      + PN +++G
Sbjct: 131 SPDFYRERGVHVRDTVHLDMEMNWFRDLLGLLCPDDLAGHNLFEN--EENFINPNRTIHG 188

Query: 211 T 209
           T
Sbjct: 189 T 189


>05_04_0045 -
           17477470-17477570,17477753-17477774,17477942-17478017,
           17478288-17478397,17478674-17478743,17478847-17479178
          Length = 236

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 371 KASFG-CDDVSSCWRKRMAATGDGNSRSVSAVG 276
           KAS+   DD  S W  R+AA  + +S S SA G
Sbjct: 66  KASWSVADDEESRWLDRLAADAESSSSSASAAG 98


>01_01_0601 - 4476261-4476728
          Length = 155

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 326 RMAATGDGNSRSVSAVGTHKGAERR 252
           R AA G+G S      G H+GA RR
Sbjct: 66  REAARGNGGSEGEGGGGAHRGARRR 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,327,075
Number of Sequences: 37544
Number of extensions: 320037
Number of successful extensions: 903
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)