Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j20
         (570 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF239608-1|AAF63500.1| 1551|Drosophila melanogaster SP1070 protein.    30   2.5  
AE014134-1211|AAF52472.1| 3396|Drosophila melanogaster CG9138-PA...    30   2.5  
BT006029-1|AAO85563.1|  351|Drosophila melanogaster LD01876p pro...    29   5.8  
AE014297-2341|AAF55411.1|  677|Drosophila melanogaster CG5319-PA...    29   5.8  
AE014297-1896|AAF55096.2| 1010|Drosophila melanogaster CG7362-PA...    29   5.8  

>AF239608-1|AAF63500.1| 1551|Drosophila melanogaster SP1070 protein.
          Length = 1551

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 235  RPNMSVYGTVQLPYDKIKRHA 173
            R N S+YGT +  YD++KRHA
Sbjct: 1516 RSNASLYGTKEDLYDRLKRHA 1536


>AE014134-1211|AAF52472.1| 3396|Drosophila melanogaster CG9138-PA
            protein.
          Length = 3396

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 235  RPNMSVYGTVQLPYDKIKRHA 173
            R N S+YGT +  YD++KRHA
Sbjct: 3357 RSNASLYGTKEDLYDRLKRHA 3377


>BT006029-1|AAO85563.1|  351|Drosophila melanogaster LD01876p
           protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 28  GGWVELKVLTSSNA*FHSPP 87
           GGW+ ++ L + N   HSPP
Sbjct: 44  GGWINVETLNNGNGLLHSPP 63


>AE014297-2341|AAF55411.1|  677|Drosophila melanogaster CG5319-PA
           protein.
          Length = 677

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 28  GGWVELKVLTSSNA*FHSPP 87
           GGW+ ++ L + N   HSPP
Sbjct: 44  GGWINVETLNNGNGLLHSPP 63


>AE014297-1896|AAF55096.2| 1010|Drosophila melanogaster CG7362-PA
            protein.
          Length = 1010

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 294  KRLGCRDT*--RCRTASVLKNCDPTCLFTGLCNCRTIKLNGMRSSKKIKRQTRWSLVCY 124
            KR  C+     +C+T   L+NC      T L  C+TIKL   +  ++++++T  +   Y
Sbjct: 891  KRKNCKTVKLEKCKTVK-LENCK----ITKLKKCKTIKLENCKQPRRVRQRTNLTKKAY 944


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,040,036
Number of Sequences: 53049
Number of extensions: 558694
Number of successful extensions: 1501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)