Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j19
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     29   2.6  
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611...    28   4.6  
03_01_0545 - 4086692-4087591                                           28   4.6  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    27   6.1  
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256...    27   8.1  
05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728     27   8.1  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    27   8.1  

>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 447 FINRRFLAVNPNGTVYGGTIESDN-ADTTFK--RLAVDRNR 334
           F  R  +    NGTVY GTI  DN A    K  RLA +R +
Sbjct: 406 FDERNVIGKGGNGTVYRGTIAKDNGAVVAIKRCRLATERQK 446


>05_05_0036 -
           21758409-21758531,21758891-21759206,21759964-21761121,
           21761236-21761333
          Length = 564

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 416 QTEPFTAEPLNRTTPTPHSSA----LPLTEIASSFKTPLRVCTC 297
           + +P    P N+T+PT HS A    +P+++I+ +     +   C
Sbjct: 38  ELDPQVGSPQNKTSPTKHSLAEPMNMPVSKISKTLTNDFQAAKC 81


>03_01_0545 - 4086692-4087591
          Length = 299

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 116 LRPFEICSFRGVPS 157
           LRPFE+C FR VP+
Sbjct: 255 LRPFEVCGFRVVPT 268


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 268 SVQLATPVYAQVHTRNGVLNDDAISVNGKALECGVGVVRFNGSAVNGSVWIYCQKP 435
           S QL+T +++      GVL    + VNG   +   G+V + G  V+ ++ +Y  +P
Sbjct: 28  SRQLSTTLFSYEDRFEGVLLAHEVVVNGDRAKILNGLVPYFGVPVHANLLLYSPQP 83


>07_01_0353 +
           2563807-2564496,2564595-2564660,2564853-2564918,
           2565044-2565115,2565196-2565261,2565355-2565417,
           2565505-2565570,2565963-2566062,2567403-2567504,
           2567772-2567995,2568200-2568314,2568653-2568763,
           2568873-2569088,2569426-2569624,2570690-2570790,
           2570872-2570919,2571052-2571236,2571345-2571462,
           2571572-2571699,2571981-2572107,2572529-2572647,
           2572770-2572938,2573078-2573162,2573247-2573320,
           2573449-2573568,2574068-2574251,2574343-2574464,
           2574548-2574755,2574885-2574958,2575047-2575185,
           2575275-2575456,2575852-2576007,2576153-2576284,
           2576508-2576566,2576913-2576945,2577065-2577196,
           2577303-2577479
          Length = 1675

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 271 VQLATPVYAQVHTRNGVLNDDAISVNGKALECGVGVVRF 387
           V+ ATP  + VH    ++ D+ I  NGK      G+ +F
Sbjct: 650 VKAATPSVSSVHVVGDIVEDNTIKGNGKYFGGKEGLSKF 688


>05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728
          Length = 477

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 428 WQ*IQTEPFTAEPLNRTTPTPHSSALPLTEIAS 330
           W  +  +PF AEP  R    P  S LP  +  S
Sbjct: 254 WGAVSVDPFAAEPDFRFVELPSGSVLPAADAIS 286


>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
            28807638-28807763,28807819-28807968,28808497-28808541,
            28808612-28808875,28809843-28809887,28810395-28810430,
            28812048-28812816,28813063-28813925,28814024-28814182,
            28814440-28814558,28815356-28815417,28816677-28816805,
            28817395-28817460,28817757-28817890,28818025-28818162,
            28818630-28818889,28818996-28819107,28819590-28819675,
            28820655-28820735,28822841-28822928,28823222-28823260,
            28823847-28823964,28824063-28824130,28824884-28824981,
            28825238-28825397,28825691-28825816,28825876-28825945,
            28826046-28826449
          Length = 1664

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 264  KTLSDDCFMREIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGK 106
            K L  +  +REI+++  YNT  K  +  +  V++ N  T      +K  KLGK
Sbjct: 885  KRLRLEFIVREIIDQ--YNTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGK 935


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,937
Number of Sequences: 37544
Number of extensions: 246072
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)