Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j17
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0004 + 2895073-2896128,2896221-2896379                           30   2.0  
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900...    30   2.0  
05_03_0314 + 12203589-12204675,12207915-12208861                       29   3.5  
03_05_0113 + 20958580-20958703,20958768-20959507                       29   3.5  
11_01_0588 - 4679813-4680970                                           29   4.6  
11_01_0579 + 4616191-4617348                                           29   4.6  
05_03_0215 + 10347431-10348831                                         28   6.1  
10_01_0107 + 1320768-1321811                                           28   8.0  
06_02_0334 + 14582925-14583404,14583533-14583540,14584070-145845...    28   8.0  

>09_02_0004 + 2895073-2896128,2896221-2896379
          Length = 404

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 160 VTSVAAVVYEWNDTA--GAPGLCESLLLHVLYNINIVNAVTAILTCARPR 303
           +  V  ++ +W D+    AP  C SL+  +   + +V+   A ++ ARPR
Sbjct: 167 ICPVKCMIRQWLDSIKFSAPVECTSLITQIAKGLGVVSDQIAFISAARPR 216


>04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,
            9004647-9004786,9004871-9005282,9006399-9006638
          Length = 1222

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 160  VTSVAAVVYEWNDTAG--APGLCESLLLHVLYNINIVNAVTAILTCARPR 303
            ++ V  ++ +W ++    AP  C SL+  +   + IV+   A ++ ARPR
Sbjct: 1047 ISPVKCIIRQWLESTKFTAPVECTSLITRITKGLGIVSDQIAFISAARPR 1096


>05_03_0314 + 12203589-12204675,12207915-12208861
          Length = 677

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 160 VTSVAAVVYEWNDTA--GAPGLCESLLLHVLYNINIVNAVTAILTCARPR 303
           ++ V  ++ +W ++    AP  C SL+  +   + +V+   A ++ ARPR
Sbjct: 226 ISPVKCMIRQWLESIKFSAPVECTSLITRIAKGLGVVSDQIAFISAARPR 275


>03_05_0113 + 20958580-20958703,20958768-20959507
          Length = 287

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 160 VTSVAAVVYEWNDTA--GAPGLCESLLLHVLYNINIVNAVTAILTCARPR 303
           ++ V  ++ +W ++    AP  C SL+  +   + +V+   A ++ ARPR
Sbjct: 112 ISPVKCMIRQWLESIKFSAPVECTSLITRIAKGLGVVSDQIAFISAARPR 161


>11_01_0588 - 4679813-4680970
          Length = 385

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 160 VTSVAAVVYEWNDTA--GAPGLCESLLLHVLYNINIVNAVTAILTCARPR 303
           ++ V  ++ +W +     AP  C SL+  +   + +V+   A ++ ARPR
Sbjct: 145 ISPVKCMIRQWLEIIKFSAPVECSSLITRIAKGLGVVSDQIAFISAARPR 194


>11_01_0579 + 4616191-4617348
          Length = 385

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 160 VTSVAAVVYEWNDTA--GAPGLCESLLLHVLYNINIVNAVTAILTCARPR 303
           ++ V  ++ +W +     AP  C SL+  +   + +V+   A ++ ARPR
Sbjct: 145 ISPVKCMIRQWLEIIKFSAPVECSSLITRIAKGLGVVSDQIAFISAARPR 194


>05_03_0215 + 10347431-10348831
          Length = 466

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 160 VTSVAAVVYEW--NDTAGAPGLCESLLLHVLYNINIVNAVTAILTCARPR 303
           ++ V  ++ +W  N    AP  C SL+  +   + +V+   A ++ ARPR
Sbjct: 195 ISPVKCMIRQWLENIKFFAPVECTSLITRIAKGLGVVSDQIAFISAARPR 244


>10_01_0107 + 1320768-1321811
          Length = 347

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 160 VTSVAAVVYEWNDTA--GAPGLCESLLLHVLYNINIVNAVTAILTCARPR 303
           +  V  ++ +W ++    AP  C SL+  +   + +V+   A ++ ARPR
Sbjct: 226 IAPVKCMIRQWLESIKFSAPVECTSLITWIAKGLGVVSDQIAFISAARPR 275


>06_02_0334 +
           14582925-14583404,14583533-14583540,14584070-14584561,
           14584733-14585087,14585338-14585505
          Length = 500

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 160 VTSVAAVVYEWNDTAG--APGLCESLLLHVLYNINIVNAVTAILTCARPR 303
           ++ V  ++ +W ++    AP  C SL+      + +V+   A ++ ARPR
Sbjct: 331 ISPVKCMIRQWLESINFSAPVECTSLITRTAKRLGVVSDQIAFISAARPR 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,104,005
Number of Sequences: 37544
Number of extensions: 360151
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)