Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j17
         (689 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051827-1|AAK93251.1|  702|Drosophila melanogaster LD33348p pro...    33   0.28 
AE014297-1567|AAF54849.1|  702|Drosophila melanogaster CG6819-PA...    33   0.28 
AY004880-1|AAF98552.1|  702|Drosophila melanogaster nucleoporin ...    32   0.84 
AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p pro...    29   7.9  

>AY051827-1|AAK93251.1|  702|Drosophila melanogaster LD33348p
           protein.
          Length = 702

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 603 LQGLRFGLALSGPVRKTEGITIPV*VKRDILTYLKSFK*TGPGM*AV*RLFIASI-GFSE 427
           L+ +   L +S P    EG   P+ +KRD++  L+ F     G+ AV   FIA +  + E
Sbjct: 345 LETVELELGISAPATGKEGGNCPIYLKRDLINELRYFAYHNAGLHAVTVSFIAELQRYLE 404

Query: 426 ELCEPNRTRLLIS 388
              + +R  L +S
Sbjct: 405 SESDEDRLELAVS 417


>AE014297-1567|AAF54849.1|  702|Drosophila melanogaster CG6819-PA
           protein.
          Length = 702

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 603 LQGLRFGLALSGPVRKTEGITIPV*VKRDILTYLKSFK*TGPGM*AV*RLFIASI-GFSE 427
           L+ +   L +S P    EG   P+ +KRD++  L+ F     G+ AV   FIA +  + E
Sbjct: 345 LETVELELGISAPATGKEGGNCPIYLKRDLINELRYFAYHNAGLHAVTVSFIAELQRYLE 404

Query: 426 ELCEPNRTRLLIS 388
              + +R  L +S
Sbjct: 405 SESDEDRLELAVS 417


>AY004880-1|AAF98552.1|  702|Drosophila melanogaster nucleoporin
           protein.
          Length = 702

 Score = 31.9 bits (69), Expect = 0.84
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 603 LQGLRFGLALSGPVRKTEGITIPV*VKRDILTYLKSFK*TGPGM*AV*RLFIASI-GFSE 427
           L+ +   L +S P    EG   P+ +KRD++  ++ F     G+ AV   FIA +  + E
Sbjct: 345 LETVELELGISAPATGKEGGNCPIYLKRDLINDVRYFAYHNAGLHAVTVSFIAELQRYLE 404

Query: 426 ELCEPNRTRLLIS 388
              + +R  L +S
Sbjct: 405 SESDEDRLELAVS 417


>AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p
           protein.
          Length = 906

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 431 LKNYANRTVLDC*YHRPRFKLHPLMSE*TNTFVVHRHTIRMRARGRAHVSMAVTAL 264
           L+N A R + DC Y+     LH  ++  T    + RHT R   R R H S+    L
Sbjct: 830 LQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRLRRHHSILARRL 885


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,505,576
Number of Sequences: 53049
Number of extensions: 615694
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)