Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14j17
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64598-5|AAK39217.3| 638|Caenorhabditis elegans Mechanosensory ... 29 4.1
U23449-5|AAC24296.2| 365|Caenorhabditis elegans Hypothetical pr... 28 5.5
U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine rece... 28 7.2
Z50006-3|CAA90299.1| 334|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical... 27 9.6
AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical... 27 9.6
AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical ... 27 9.6
AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein. 27 9.6
AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein. 27 9.6
AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein. 27 9.6
>U64598-5|AAK39217.3| 638|Caenorhabditis elegans Mechanosensory
abnormality protein18 protein.
Length = 638
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 146 QLAYESPLLQLLFTSGTTRPAHLACVSHSYCTCYIT*ISL 265
Q++ ++PLL +LFTSGTT A A +SH I ISL
Sbjct: 234 QVSGQNPLL-ILFTSGTTGLAKAAELSHRSLIINIQQISL 272
>U23449-5|AAC24296.2| 365|Caenorhabditis elegans Hypothetical
protein K06A1.1 protein.
Length = 365
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 69 SKCTRQTQSNECSFQGTFPPFYTSRRSWLMSHLCCSC 179
S+C + + + PPFY + R++ SH+ SC
Sbjct: 18 SQCDEEDEEEQQRQSSQRPPFYENMRTFAPSHMHISC 54
>U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 11 protein.
Length = 350
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 147 SWLMSHLCCSCCLRVERHGRRTW 215
S+L+SH+ CC + +RH TW
Sbjct: 272 SFLLSHIISYCCEKWKRHLSATW 294
>Z50006-3|CAA90299.1| 334|Caenorhabditis elegans Hypothetical
protein T07C5.2 protein.
Length = 334
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 424 FFRKSYTGYK*PSDCLHTW-----ASSFKTLQVCKYVPFN 528
FFR+S T + DC H W +S+ + L C++ FN
Sbjct: 30 FFRRSMTPWSFFGDCKHNWDCYKESSNRQRLPKCRHCRFN 69
>AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical
protein Y39E4B.12c protein.
Length = 624
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 569 VQFEKLKG*QFRSKLKGTYLHT*RVLNELAQVCKQSEGYL*PV*DFLK 426
++ EK +G R++L+G + T VL L C+ EG++ P+ D +K
Sbjct: 240 LRMEKREG-LIRARLRGAAVATGEVLTYLDSHCECMEGWMEPLLDRIK 286
>AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical
protein Y39E4B.12b protein.
Length = 623
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 569 VQFEKLKG*QFRSKLKGTYLHT*RVLNELAQVCKQSEGYL*PV*DFLK 426
++ EK +G R++L+G + T VL L C+ EG++ P+ D +K
Sbjct: 240 LRMEKREG-LIRARLRGAAVATGEVLTYLDSHCECMEGWMEPLLDRIK 286
>AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical
protein Y39E4B.12a protein.
Length = 626
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 569 VQFEKLKG*QFRSKLKGTYLHT*RVLNELAQVCKQSEGYL*PV*DFLK 426
++ EK +G R++L+G + T VL L C+ EG++ P+ D +K
Sbjct: 240 LRMEKREG-LIRARLRGAAVATGEVLTYLDSHCECMEGWMEPLLDRIK 286
>AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein.
Length = 624
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 569 VQFEKLKG*QFRSKLKGTYLHT*RVLNELAQVCKQSEGYL*PV*DFLK 426
++ EK +G R++L+G + T VL L C+ EG++ P+ D +K
Sbjct: 240 LRMEKREG-LIRARLRGAAVATGEVLTYLDSHCECMEGWMEPLLDRIK 286
>AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein.
Length = 626
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 569 VQFEKLKG*QFRSKLKGTYLHT*RVLNELAQVCKQSEGYL*PV*DFLK 426
++ EK +G R++L+G + T VL L C+ EG++ P+ D +K
Sbjct: 240 LRMEKREG-LIRARLRGAAVATGEVLTYLDSHCECMEGWMEPLLDRIK 286
>AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein.
Length = 623
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 569 VQFEKLKG*QFRSKLKGTYLHT*RVLNELAQVCKQSEGYL*PV*DFLK 426
++ EK +G R++L+G + T VL L C+ EG++ P+ D +K
Sbjct: 240 LRMEKREG-LIRARLRGAAVATGEVLTYLDSHCECMEGWMEPLLDRIK 286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,512
Number of Sequences: 27780
Number of extensions: 316948
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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