Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j14
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0026 - 5086596-5086755,5087035-5087105,5087407-5087466,508...    31   1.1  
09_02_0431 - 9327167-9327226,9327347-9327474,9327594-9327709,932...    28   5.6  

>03_02_0026 -
           5086596-5086755,5087035-5087105,5087407-5087466,
           5087625-5087684,5088012-5088054,5088130-5088221,
           5088304-5088372,5088458-5088502,5089209-5089317,
           5089579-5089679,5089769-5089861,5089936-5089996,
           5090084-5090187,5091592-5091972
          Length = 482

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 6   EILPQWDKQIQSLCYQVNSLIEKIAS 83
           E L QWD+QI  LC  +N +++ ++S
Sbjct: 398 EELQQWDQQIAGLCQALNDILDSMSS 423


>09_02_0431 -
           9327167-9327226,9327347-9327474,9327594-9327709,
           9327816-9327895,9328787-9328912,9329676-9329856,
           9330514-9330578,9330655-9330915
          Length = 338

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 295 NCNLLLISPLFIEFYYTYKP 354
           NCNL++I  LF   Y+ YKP
Sbjct: 304 NCNLVIIDFLFRHGYHVYKP 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,246,880
Number of Sequences: 37544
Number of extensions: 233283
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)