Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j14
         (655 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093007-1|AAH93007.1|  406|Homo sapiens COP9 constitutive photo...    66   1e-10
BC009292-1|AAH09292.1|  406|Homo sapiens COP9 constitutive photo...    66   1e-10
BC004302-1|AAH04302.1|  406|Homo sapiens COP9 constitutive photo...    66   1e-10
AK223178-1|BAD96898.1|  406|Homo sapiens COP9 signalosome subuni...    66   1e-10
AK001210-1|BAA91555.1|  394|Homo sapiens protein ( Homo sapiens ...    66   1e-10
AF100757-1|AAD43021.1|  405|Homo sapiens COP9 complex subunit 4 ...    66   1e-10

>BC093007-1|AAH93007.1|  406|Homo sapiens COP9 constitutive
           photomorphogenic homolog subunit 4 (Arabidopsis)
           protein.
          Length = 406

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +3

Query: 3   REILPQWDKQIQSLCYQVNSLIEKIASAEPEWMAKVVEEEMIQ 131
           RE LP WDKQIQSLC+QVN+L+EKI+   PEW A+ +E +M Q
Sbjct: 364 REALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ 406


>BC009292-1|AAH09292.1|  406|Homo sapiens COP9 constitutive
           photomorphogenic homolog subunit 4 (Arabidopsis)
           protein.
          Length = 406

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +3

Query: 3   REILPQWDKQIQSLCYQVNSLIEKIASAEPEWMAKVVEEEMIQ 131
           RE LP WDKQIQSLC+QVN+L+EKI+   PEW A+ +E +M Q
Sbjct: 364 REALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ 406


>BC004302-1|AAH04302.1|  406|Homo sapiens COP9 constitutive
           photomorphogenic homolog subunit 4 (Arabidopsis)
           protein.
          Length = 406

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +3

Query: 3   REILPQWDKQIQSLCYQVNSLIEKIASAEPEWMAKVVEEEMIQ 131
           RE LP WDKQIQSLC+QVN+L+EKI+   PEW A+ +E +M Q
Sbjct: 364 REALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ 406


>AK223178-1|BAD96898.1|  406|Homo sapiens COP9 signalosome subunit 4
           variant protein.
          Length = 406

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +3

Query: 3   REILPQWDKQIQSLCYQVNSLIEKIASAEPEWMAKVVEEEMIQ 131
           RE LP WDKQIQSLC+QVN+L+EKI+   PEW A+ +E +M Q
Sbjct: 364 REALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ 406


>AK001210-1|BAA91555.1|  394|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10348 fis, clone NT2RM2001065. ).
          Length = 394

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +3

Query: 3   REILPQWDKQIQSLCYQVNSLIEKIASAEPEWMAKVVEEEMIQ 131
           RE LP WDKQIQSLC+QVN+L+EKI+   PEW A+ +E +M Q
Sbjct: 352 REALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ 394


>AF100757-1|AAD43021.1|  405|Homo sapiens COP9 complex subunit 4
           protein.
          Length = 405

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +3

Query: 3   REILPQWDKQIQSLCYQVNSLIEKIASAEPEWMAKVVEEEMIQ 131
           RE LP WDKQIQSLC+QVN+L+EKI+   PEW A+ +E +M Q
Sbjct: 363 REALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ 405


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,781,470
Number of Sequences: 237096
Number of extensions: 1415884
Number of successful extensions: 2028
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2026
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)