Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j14
         (655 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004883-1|AAO45239.1|  407|Drosophila melanogaster GH09439p pro...    67   2e-11
AF129082-1|AAD28607.1|  407|Drosophila melanogaster COP9 signalo...    67   2e-11
AE013599-559|AAF59157.1|  407|Drosophila melanogaster CG8725-PA ...    67   2e-11
AE014134-240|AAZ66444.1|  178|Drosophila melanogaster CG33922-PA...    29   5.5  

>BT004883-1|AAO45239.1|  407|Drosophila melanogaster GH09439p
           protein.
          Length = 407

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 27/33 (81%), Positives = 32/33 (96%)
 Frame = +3

Query: 3   REILPQWDKQIQSLCYQVNSLIEKIASAEPEWM 101
           RE+LPQWD+QIQSLCYQVNS+IEKI+ AEP+WM
Sbjct: 371 RELLPQWDRQIQSLCYQVNSIIEKISVAEPDWM 403


>AF129082-1|AAD28607.1|  407|Drosophila melanogaster COP9
           signalosome subunit 4 CSN4 protein.
          Length = 407

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 27/33 (81%), Positives = 32/33 (96%)
 Frame = +3

Query: 3   REILPQWDKQIQSLCYQVNSLIEKIASAEPEWM 101
           RE+LPQWD+QIQSLCYQVNS+IEKI+ AEP+WM
Sbjct: 371 RELLPQWDRQIQSLCYQVNSIIEKISVAEPDWM 403


>AE013599-559|AAF59157.1|  407|Drosophila melanogaster CG8725-PA
           protein.
          Length = 407

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 27/33 (81%), Positives = 32/33 (96%)
 Frame = +3

Query: 3   REILPQWDKQIQSLCYQVNSLIEKIASAEPEWM 101
           RE+LPQWD+QIQSLCYQVNS+IEKI+ AEP+WM
Sbjct: 371 RELLPQWDRQIQSLCYQVNSIIEKISVAEPDWM 403


>AE014134-240|AAZ66444.1|  178|Drosophila melanogaster CG33922-PA
           protein.
          Length = 178

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 250 FIFYILLATPSLRFVNCNLLLISPLFIEFYYTYKPSSSIT---LSIKKNLARSPM 405
           F+F I L    L F N   + + P F  F+Y +  S + T    S+K  L ++P+
Sbjct: 13  FLFTIHLVICKLEFTNIKCVTLDPEFAVFHYCFLKSVNRTYKYYSLKVKLLKTPV 67


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,957,832
Number of Sequences: 53049
Number of extensions: 430300
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)