Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j11
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1138 - 24240155-24240219,24240427-24240559,24240640-242411...    28   7.6  
04_04_0553 + 26200734-26200854,26200932-26200978,26201081-262011...    28   7.6  
02_05_0626 - 30456714-30456829,30456951-30457023,30457136-304572...    28   7.6  

>07_03_1138 -
           24240155-24240219,24240427-24240559,24240640-24241182,
           24241306-24241411,24241630-24241727,24242289-24242516,
           24242990-24243307,24243411-24243695,24243706-24243771,
           24244337-24244738
          Length = 747

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 454 YLPLRTHKRSYDQLRKL*FCRFNFYYTMLFRGSQSLI 564
           ++PL+    S+++L KL  C+FNF+  ML  GS + +
Sbjct: 121 WIPLKAD--SFEKLEKL--CKFNFFSCMLSLGSDNTL 153


>04_04_0553 +
           26200734-26200854,26200932-26200978,26201081-26201158,
           26201270-26201340,26201430-26201513,26201679-26201691
          Length = 137

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = -1

Query: 338 IVDVWAPVTT*HQVGSELIQPSKQKKVPKI*LQHIELDLNLNHCEVKDCESITINISKLQ 159
           I D W P  T +++  ++ + S+ K++P + +    +   +N C  +  E     +  +Q
Sbjct: 64  ITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFL--LKPVQ 121

Query: 158 TSD 150
            SD
Sbjct: 122 PSD 124


>02_05_0626 -
           30456714-30456829,30456951-30457023,30457136-30457250,
           30457368-30457450,30457532-30457685,30457859-30458095,
           30458212-30458435,30458657-30458774,30459286-30459614
          Length = 482

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 323 APVTT*HQVGSELIQPSKQKKVPKI*LQHIELDLNLNHCEV-KDCE 189
           AP T   +    L +P+K+K VP   L   EL  N N+CE  K C+
Sbjct: 142 APCTNCAKGPHPLYKPAKEKIVPPKDLLCQELQGNQNYCETCKQCD 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,396
Number of Sequences: 37544
Number of extensions: 315254
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)