Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j11
         (662 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021949-1|AAX51654.1|  819|Drosophila melanogaster LD12033p pro...    29   4.3  
AE014296-2720|AAF49474.1|  819|Drosophila melanogaster CG16807-P...    29   4.3  
AY084119-1|AAL89857.1|  658|Drosophila melanogaster LD19039p pro...    29   7.5  
AE014135-21|AAN06552.1|  658|Drosophila melanogaster CG32000-PD,...    29   7.5  
BT001894-1|AAN71683.1| 1047|Drosophila melanogaster SD17880p pro...    28   9.9  
AE014135-23|AAN06553.1|  595|Drosophila melanogaster CG32000-PE,...    28   9.9  
AE014135-22|AAS64610.1| 1388|Drosophila melanogaster CG32000-PG,...    28   9.9  

>BT021949-1|AAX51654.1|  819|Drosophila melanogaster LD12033p
           protein.
          Length = 819

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 275 MVGLAQSPPGVKLLLEPRHLQCYQ 346
           ++ LA  PP V+ L EP HL+CYQ
Sbjct: 79  LLELAPPPPSVQKL-EPEHLKCYQ 101


>AE014296-2720|AAF49474.1|  819|Drosophila melanogaster CG16807-PA
           protein.
          Length = 819

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 275 MVGLAQSPPGVKLLLEPRHLQCYQ 346
           ++ LA  PP V+ L EP HL+CYQ
Sbjct: 79  LLELAPPPPSVQKL-EPEHLKCYQ 101


>AY084119-1|AAL89857.1|  658|Drosophila melanogaster LD19039p
           protein.
          Length = 658

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 326 WAPVTT*HQVGSELIQPSKQKKVPKI*LQHIELDLNL-NHCEVKDCESI-TINISKLQTS 153
           W      H V +E +QP K  KVP   ++ +E +  L N C      S+  +  ++    
Sbjct: 58  WHSPVDMHYVATESVQPKKSDKVPSNKIKKVENNNTLVNGCSKTSARSVPLLKYNRPDQD 117

Query: 152 DNVQFHATSVL 120
            + + + TSVL
Sbjct: 118 GDSEENITSVL 128


>AE014135-21|AAN06552.1|  658|Drosophila melanogaster CG32000-PD,
           isoform D protein.
          Length = 658

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 326 WAPVTT*HQVGSELIQPSKQKKVPKI*LQHIELDLNL-NHCEVKDCESI-TINISKLQTS 153
           W      H V +E +QP K  KVP   ++ +E +  L N C      S+  +  ++    
Sbjct: 58  WHSPVDMHYVATESVQPKKSDKVPSNKIKKVENNNTLVNGCSKTSARSVPLLKYNRPDQD 117

Query: 152 DNVQFHATSVL 120
            + + + TSVL
Sbjct: 118 GDSEENITSVL 128


>BT001894-1|AAN71683.1| 1047|Drosophila melanogaster SD17880p
           protein.
          Length = 1047

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 305 HQVGSELIQPSKQKKVPKI*LQHIELDLNL-NHCEVKDCESI-TINISKLQTSDNVQFHA 132
           H V +E +QP K  KVP   ++ +E +  L N C      S+  +  ++     + + + 
Sbjct: 2   HYVATESVQPKKSDKVPSNKIKKVENNNTLVNGCSKTSARSVPLLKYNRPDQDGDSEENI 61

Query: 131 TSVL 120
           TSVL
Sbjct: 62  TSVL 65


>AE014135-23|AAN06553.1|  595|Drosophila melanogaster CG32000-PE,
           isoform E protein.
          Length = 595

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 305 HQVGSELIQPSKQKKVPKI*LQHIELDLNL-NHCEVKDCESI-TINISKLQTSDNVQFHA 132
           H V +E +QP K  KVP   ++ +E +  L N C      S+  +  ++     + + + 
Sbjct: 2   HYVATESVQPKKSDKVPSNKIKKVENNNTLVNGCSKTSARSVPLLKYNRPDQDGDSEENI 61

Query: 131 TSVL 120
           TSVL
Sbjct: 62  TSVL 65


>AE014135-22|AAS64610.1| 1388|Drosophila melanogaster CG32000-PG,
           isoform G protein.
          Length = 1388

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 305 HQVGSELIQPSKQKKVPKI*LQHIELDLNL-NHCEVKDCESI-TINISKLQTSDNVQFHA 132
           H V +E +QP K  KVP   ++ +E +  L N C      S+  +  ++     + + + 
Sbjct: 2   HYVATESVQPKKSDKVPSNKIKKVENNNTLVNGCSKTSARSVPLLKYNRPDQDGDSEENI 61

Query: 131 TSVL 120
           TSVL
Sbjct: 62  TSVL 65


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,789,573
Number of Sequences: 53049
Number of extensions: 553985
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2848092300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)