Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j11
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    29   3.9  
Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical ...    28   6.8  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 230 LDLNLNHCEVKDCESITINISKLQTSDNVQFHAT 129
           +D+NL   E+ D  + T N+S +Q SD     AT
Sbjct: 110 VDVNLEQSELYDTSNCTSNLSMVQESDETDADAT 143


>Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical
           protein K01D12.2 protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 147 CSISCY*CSTNNCYLMIITAT---STF*FILLHFLYSFIAFKTL 25
           CS S   CS+ N Y+ I TAT    TF   +LHF      F TL
Sbjct: 98  CSNSAQQCSSTNSYIPIQTATVSIPTFNGEILHFQSFMELFNTL 141


>Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical
           protein T25B9.5 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 359 ISSKVSV*LQRLPHPSNRNALL-LHGKNRXGVGTYPCGLTRGPTTNYA 499
           ++ K SV  Q++P  S R+    L  KN+  V T P G++  P+TN A
Sbjct: 470 LNRKKSVDRQKIPSSSKRSFFSSLRKKNKDQV-TLPAGMSISPSTNSA 516


>AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical
           protein Y69E1A.3 protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 359 ISSKVSV*LQRLPHPSNRNALL-LHGKNRXGVGTYPCGLTRGPTTNYA 499
           ++ K SV  Q++P  S R+    L  KN+  V T P G++  P+TN A
Sbjct: 492 LNRKKSVDRQKIPSSSKRSFFSSLRKKNKDQV-TLPAGMSISPSTNSA 538


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 218 LNHCEVKDC----ESITINISKLQTSDNVQFHATSVLP 117
           L+H ++K C    + + +N+SKL T +    H TS+ P
Sbjct: 100 LDHQQIKRCIQEDQQMLLNMSKLITLNQAHSHPTSIAP 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,839
Number of Sequences: 27780
Number of extensions: 293871
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)