Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14j08
         (760 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    27   0.63 
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    25   3.3  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    24   5.9  
AF000953-1|AAB96576.1|  433|Anopheles gambiae carboxypeptidase A...    23   7.7  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 27.1 bits (57), Expect = 0.63
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 76  FAQHHHDLPNSCSSNLGL 23
           F Q HH  PN+C SNLG+
Sbjct: 444 FLQQHHQKPNAC-SNLGV 460


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 447 RCKRWVCRSSPI*RGSQTTRTSWCTRCGCS*LGSRRPF*PD*FCIRCSCPRRMA 608
           RC R + R   +     T R+S C RCG +   +      D  C+ C  P R+A
Sbjct: 235 RCFRCLERGHMVRECQGTNRSSLCIRCGAANHKAVNCT-NDVKCLLCGGPHRIA 287


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +3

Query: 423 PLLRQSLCRCKRWVCRSSPI*RGSQTTRTSWCTRCGCS*LGSRRPF*PD*FCIRCSCPRR 602
           P  +QS  RC R + R       +   R+S C  CG +   +      D  CI C  P R
Sbjct: 282 PKQQQSAVRCFRCLERGHTTADCAGEDRSSLCLHCGAADHRAASCT-SDPKCIVCGGPHR 340

Query: 603 MA 608
           +A
Sbjct: 341 IA 342


>AF000953-1|AAB96576.1|  433|Anopheles gambiae carboxypeptidase A
           protein.
          Length = 433

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 672 LAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKK 556
           LA      E DY+PHE   ++E +     +E R+ L  K
Sbjct: 85  LADFTETLESDYIPHE---LIEQNVQRAFDEERVRLTNK 120


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,935
Number of Sequences: 2352
Number of extensions: 14610
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)