Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i22
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    29   0.57 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   0.75 
SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo...    29   0.99 
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    26   7.0  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   7.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.2  

>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = +2

Query: 485 ADLSPPQLSVKPSAPPAEPLTQHVSECKVCFDREKSVCFMPCRHLAVCTEC-------SR 643
           A++   + S K   P ++ L  +  +C +C D  +++   PC H+  C  C       + 
Sbjct: 182 AEIEKEEPSKKQVVPSSQRLADY--KCVICLDSPENLSCTPCGHI-FCNFCILSALGTTA 238

Query: 644 RCKRCCVCNAKI 679
             ++C VC  K+
Sbjct: 239 ATQKCPVCRRKV 250


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 475  FFFRNIKFAKVFINGIVFYCVDKFAILFVP 386
            FFFRN+ F  VF+  ++ Y    F IL VP
Sbjct: 1022 FFFRNL-FQIVFVLAVICYSSPMFMILIVP 1050


>SPBC4C3.04c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 646 PTRTFRAHSQVTARHETHRFFSIKTNFAFGNV 551
           PT +   HS+     ET  FF +K  FAF NV
Sbjct: 27  PTMSAMLHSETQEDLETDDFFLLKDPFAFDNV 58


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 169 IIRICVSFNLLGVNLVQNRATAYTFNQVIVRKQP 68
           +I + V  N++G+++VQN      FN   V KQP
Sbjct: 223 LILVQVIKNIIGISIVQNFEELRRFNLNEVYKQP 256


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 302 YYFGKAGHLRCSGCHIVFKYKSVDD 376
           YYFG AGHL   G     K   ++D
Sbjct: 745 YYFGNAGHLHIHGRTFPIKDYYIED 769


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 430 IVFYCVDKFAILFVPALGVVYAFIFKN 350
           I  +C+  F ILF+ AL    A + KN
Sbjct: 899 ISHFCISNFLILFITALEHASAILCKN 925


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,534
Number of Sequences: 5004
Number of extensions: 63256
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)