Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14i20
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom... 29 0.73
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 1.3
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 3.9
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 26 3.9
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.2
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 6.8
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 25 6.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 6.8
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.8
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 9.0
>SPAC12B10.15c |||ribonuclease H2 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 0.73
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 301 CHIWFDTPAPFFSRYHTQTQ 242
CHI +D PAP F +H + Q
Sbjct: 26 CHISYDGPAPVFEYFHDKIQ 45
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 205 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 119
++QK +P DK P N L+L A TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 507 LNVE-LAIGHGIVFHGRVKHGIGRIVIHPTERVRIYVFEQPV 629
LNV L +GH FHG V GRI++ T Y E+ V
Sbjct: 268 LNVNRLVMGHTPQFHGIVSRCEGRILLIDTGLCSAYAGERAV 309
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 509 EDYNNIFKVMENIRKHSNKNLNDQD 435
ED N+ K ++RKH +N D+D
Sbjct: 86 EDLYNLIKKAVSVRKHLERNRKDKD 110
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 353 LCSCSFYLINIFYALHSTIELPNICLTRLGRLNFCCCVS*YFPS 484
L +CS I++ Y L+ LP I + LNF ++ YF S
Sbjct: 120 LSTCSPLWISVIYLLNPLTFLPGIACSADMILNFTTLMTIYFAS 163
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 629 NRLLKHIDPYPLSRMYYNAANTM 561
N L ID PLSR Y+NA T+
Sbjct: 1211 NNLALAIDRLPLSRNYFNAGLTL 1233
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 205 HIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK-ERSDFVACP 77
H QK + P P++QNT H THP + SDF + P
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 59 TVESQTRAGDEIASFLRYC 115
T+E +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 102 NEAISSPALVWLSTVTKSCLQDFKLSPLSSNSL 4
NE ++SP +++T S L+DF+ SP S L
Sbjct: 164 NEQVASPLSKKAASLTSSPLKDFQSSPPLSTVL 196
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 554 TTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNK 453
+++E ++ K IED N K +E IRK S +
Sbjct: 67 SSLEENKLTKLKAPIEDMENTKKELEEIRKQSTE 100
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 575 AANTMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLND 441
AA T + ++YA S D KV + +KH +KN+ D
Sbjct: 93 AAPTQLVRSCDDYANSASTLVTNDDGTKTKVDSDEKKHKHKNVRD 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,613
Number of Sequences: 5004
Number of extensions: 49878
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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