Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14i20
(631 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone este... 23 1.9
AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein. 23 1.9
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 23 2.4
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 23 2.4
AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein. 23 3.2
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 5.7
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 5.7
DQ435331-1|ABD92646.1| 135|Apis mellifera OBP14 protein. 21 7.5
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 21 7.5
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 21 9.9
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 21 9.9
>AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone
esterase protein.
Length = 567
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 617 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIEDYNNIFKVMENIRK 465
KH++ L R YY +N + TT+++ V++ +F I D ++ + +
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNR 433
>AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein.
Length = 567
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 617 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIEDYNNIFKVMENIRK 465
KH++ L R YY +N + TT+++ V++ +F I D ++ + +
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNR 433
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 23.0 bits (47), Expect = 2.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 315 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 422
DD D K + C+ A V LIF L RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 23.0 bits (47), Expect = 2.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 315 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 422
DD D K + C+ A V LIF L RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247
>AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein.
Length = 104
Score = 22.6 bits (46), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 171 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 251
LS+N S I C+ + GG C C+C
Sbjct: 74 LSINHSACAIRCLAQRRKGGSCRNGVCIC 102
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.8 bits (44), Expect = 5.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 565 PCFTRPWKTMPCPIASSTL 509
PCF P ++P P A L
Sbjct: 469 PCFEEPLPSLPLPGADDDL 487
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.8 bits (44), Expect = 5.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 550 PWKTMPCPIASSTLRITITYLR 485
P +T P P +++ + TIT+LR
Sbjct: 293 PPETQPTPPSATLVGTTITHLR 314
>DQ435331-1|ABD92646.1| 135|Apis mellifera OBP14 protein.
Length = 135
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 518 FNIEDYNNIFK 486
FNI D NN+FK
Sbjct: 70 FNILDKNNVFK 80
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 539 YAVSNCKFNIEDYNNIFKVMENIRKHSNKNLN 444
Y+ S C + I Y+ I + NKN N
Sbjct: 65 YSGSKCTWTITSYHRINLKCSLVEFSENKNCN 96
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 421 IWEFNRRMQSVKNINKVK 368
IW NRRM+ K + VK
Sbjct: 54 IWFQNRRMKLKKELRAVK 71
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3
Query: 279 GVSNHMWHRLKNDDGDDKP 335
G+S WH+ + G KP
Sbjct: 2 GISRDHWHKRRATGGKRKP 20
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,087
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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