Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14i18
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 33 0.015
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 1.3
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 1.3
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 27 1.7
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 26 2.3
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 4.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 4.0
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 6.9
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 6.9
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 24 9.1
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 24 9.1
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 33.5 bits (73), Expect = 0.015
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -3
Query: 142 YDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRPCFFR 17
Y N TVL+D A L + +Q S SS+++ L+ +P FFR
Sbjct: 543 YYNCMTVLEDEVIAQLKSLLQYSKTSSQMFTTLMRFQPLFFR 584
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 178 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 83
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 1.3
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -3
Query: 277 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 98
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 97 LSASIQASLPSSEIYRQL 44
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 41 YQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 151
Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 118 YKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 95 LCIYSSFSPFLRDLPPVGRFSPMFL 21
LC+ S+F P +R P+ S MF+
Sbjct: 520 LCVTSAFMPAIRSPSPINFLSSMFI 544
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 4.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 253 LVTHKELALKVSSIIGTRVYVFDPSCY 173
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 4.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 38 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 139
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 6.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 187 DPSCYFSTPPFDTVLYDNIRT 125
DP+ Y PFDTV D + T
Sbjct: 706 DPAAYDKISPFDTVDIDGLTT 726
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 113 QQNCS-SLCIYSSFSPFLRDLPPVGRFSP 30
Q+ C+ LC YS SP R+LP F P
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHP 523
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 243 IRNWPSRFLLS*APESTSSIPPATFQ 166
IR W S+F+ S A + + P T Q
Sbjct: 128 IREWSSKFMNSKASQKQQMLSPETMQ 153
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 24.2 bits (50), Expect = 9.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 393 SQASRLISXSFHAYXAPLLQLTPSL 319
SQ S+L+ +F+A+ PLLQ+ SL
Sbjct: 519 SQMSQLVK-NFYAFEDPLLQIEKSL 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,778
Number of Sequences: 5004
Number of extensions: 26268
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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