Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i18
         (444 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC078174-1|AAH78174.1|  310|Homo sapiens AMMECR1L protein protein.     32   1.0  
BC016181-1|AAH16181.1|  310|Homo sapiens AMME chromosomal region...    32   1.0  
BC028182-1|AAH28182.1| 1401|Homo sapiens non-SMC condensin I com...    29   5.5  

>BC078174-1|AAH78174.1|  310|Homo sapiens AMMECR1L protein protein.
          Length = 310

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -2

Query: 137 QHQDGS*GQQNCSSLCIYSSFSPFLRDLPPVGRFSPMFLPTPFG 6
           QH D S G++N S L +    SP  R  P  G  SP  LP P G
Sbjct: 53  QHVDSSSGRENVSDLTLGPGNSPITRMNPASGALSP--LPRPNG 94


>BC016181-1|AAH16181.1|  310|Homo sapiens AMME chromosomal region
           gene 1-like protein.
          Length = 310

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -2

Query: 137 QHQDGS*GQQNCSSLCIYSSFSPFLRDLPPVGRFSPMFLPTPFG 6
           QH D S G++N S L +    SP  R  P  G  SP  LP P G
Sbjct: 53  QHVDSSSGRENVSDLTLGPGNSPITRMNPASGALSP--LPRPNG 94


>BC028182-1|AAH28182.1| 1401|Homo sapiens non-SMC condensin I complex,
            subunit D2 protein.
          Length = 1401

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 187  DPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRPCFFRLPL 8
            DP       PF T++   +  + KD +T  L   +     +S   RQ  D   C  +LPL
Sbjct: 1176 DPELGVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPL 1235


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,043,972
Number of Sequences: 237096
Number of extensions: 977355
Number of successful extensions: 2105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2105
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)