Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i18
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    30   0.87 
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    30   0.87 
AF100663-2|AAC68981.2|  532|Caenorhabditis elegans Udp-glucurono...    28   2.7  
AF100663-3|AAC68980.1|  529|Caenorhabditis elegans Udp-glucurono...    28   3.5  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   6.1  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   6.1  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   6.1  

>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 62   RDLPPVGRFSPMFLPTPFG 6
            R LPP G F PM +P+P+G
Sbjct: 2298 RFLPPPGHFGPMGVPSPYG 2316


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 62   RDLPPVGRFSPMFLPTPFG 6
            R LPP G F PM +P+P+G
Sbjct: 2716 RFLPPPGHFGPMGVPSPYG 2734


>AF100663-2|AAC68981.2|  532|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein19 protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
 Frame = +2

Query: 20  EETWARIYQLA-----VDLGGRERSLNRCRE-KSSFV-VLKNRPDVVVQYGIEGRS*KVA 178
           EE W++I  +      +  G   RS++   E K++F+ V+K+ PD    +  E  + K  
Sbjct: 285 EEKWSKILDIRKKNVFISFGSNARSVDMPLEYKNTFLQVIKSMPDTTFIWKYEDLNDKFT 344

Query: 179 GGIEDVDSGAYDRRN 223
            GIE+V  G +  +N
Sbjct: 345 EGIENVYLGDWLPQN 359


>AF100663-3|AAC68980.1|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein20 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
 Frame = +2

Query: 20  EETWARIYQLA-----VDLGGRERSLNRCRE-KSSFV-VLKNRPDVVVQYGIEGRS*KVA 178
           EE W++I  +      +  G   RS++   E K +F+ V+K+ PD    +  E  + K  
Sbjct: 282 EEKWSKILDIRKKNVFISFGSNARSVDMPLEYKKTFLQVIKSMPDTTFIWKYEDLNDKFT 341

Query: 179 GGIEDVDSGAYDRRN 223
            GIE+V  G +  +N
Sbjct: 342 EGIENVYLGDWLPQN 356


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 193 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRPCF 23
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L+ +   F
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVF 291


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 48  WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 155
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 48  WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 155
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,011,899
Number of Sequences: 27780
Number of extensions: 149365
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)