Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i18
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   3.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 23  ETWARIYQLAVDL 61
           ETW R++   VDL
Sbjct: 238 ETWTRVFNTLVDL 250


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 337 PTHPXIEDVVMATNQAIIDYKV 272
           P H    D+V+ + Q   DYK+
Sbjct: 334 PLHDATRDLVLMSEQFEADYKL 355


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 337 PTHPXIEDVVMATNQAIIDYKV 272
           P H    D+V+ + Q   DYK+
Sbjct: 334 PLHDATRDLVLMSEQFEADYKL 355


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = -1

Query: 417 PYFQXNDESQASRLISXSFHAYXAPLLQLTPS 322
           PY     E     L    FH+  A    L+PS
Sbjct: 391 PYHPSTQEDSEEHLTPKRFHSRAASKEDLSPS 422


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = -1

Query: 417 PYFQXNDESQASRLISXSFHAYXAPLLQLTPS 322
           PY     E     L    FH+  A    L+PS
Sbjct: 391 PYHPSTQEDSEEHLTPKRFHSRAASKEDLSPS 422


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 13  GVGRNMGENLP 45
           GVGRN+G  +P
Sbjct: 150 GVGRNVGYKIP 160


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 13  GVGRNMGENLP 45
           GVGRN+G  +P
Sbjct: 150 GVGRNVGYKIP 160


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 22  RNMGENLPTGGRS 60
           RN+ EN P GG S
Sbjct: 560 RNLDENRPIGGDS 572


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 13  GVGRNMGENLP 45
           GVGRN+G  +P
Sbjct: 150 GVGRNVGYKIP 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,731
Number of Sequences: 438
Number of extensions: 2266
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)