Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i14
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    30   0.36 
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      28   1.1  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    27   2.5  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    27   2.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   7.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.8  

>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -1

Query: 552 VKREMKRKKRDLDSSQETIAELNETPAKVKRKDKTTVSGNKLYPDNP-LPDAF--KDKIL 382
           +K++ KR+   L S  E  A   E+  K KR DK         P +P +P++F  KDKIL
Sbjct: 4   LKKKSKRRTTRLRSRIEKKAA--ESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKIL 61

Query: 381 SLYPDLISFSEDER 340
           +   +     E+E+
Sbjct: 62  AEIEEQKRIREEEK 75


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -1

Query: 534 RKKRDLDSSQETIAELNETPAKVKRKDKTTVSGNKLYPDNPLPDAFKDKILSLYPDLISF 355
           R +RD +S  E +   +      K+K   T  G  + P+    DAF+ K++ L    ++F
Sbjct: 247 RMERD-ESILEFLQRQSGNKKSYKKKKNNTAEG--ISPERKSADAFRKKLIELITAGLTF 303

Query: 354 SEDE 343
            ED+
Sbjct: 304 LEDK 307


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 531 KKRDLDSSQETIAELNETPAKVKRKDKTTVSGNKLYP 421
           K RDL S    +  L  TP  VK  +KT +S    YP
Sbjct: 102 KSRDLSSHSNGLDALAMTPYIVKENNKTHLSPRGNYP 138


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -1

Query: 303 VLVKSMRSANVDFVVHNNNCITYKEMQRLKEELRQGVRHVTKNWLIRCIN 154
           V V S RS+ +DF+V  + C    E  RL + L +  RH+  + LIR ++
Sbjct: 190 VRVTSFRSS-IDFIVIESICKFSIETFRLTDRLHESNRHI-NDQLIRLLS 237


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 122 AYLVVSHSATSFIHLINQFFVTCLT 196
           AY+     +  FI++ NQFFVT  T
Sbjct: 812 AYVTCIEKSEHFIYIENQFFVTSTT 836


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 522 DLD--SSQETIAELNETPAKVKRKDKTTVSGNKLYPDNPLPDAFKDK 388
           D+D  S  E  +E +E   K K+K K+   G++   D  +  + KDK
Sbjct: 132 DMDDLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDK 178


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +1

Query: 262  DKINVRRSHRFHKNTSVRNPMPNKMFSFVLRKRY*VGI*T*YFIFERVRQ--RVVGV*FI 435
            DK+++ +S RFH+   + N M N       R RY + I +   I  ++R+  R++G+ F+
Sbjct: 841  DKVHLWQSSRFHEKQILLNYMLN-------RTRYCLEILSACAIVTKIREQARIIGIDFM 893

Query: 436  S 438
            S
Sbjct: 894  S 894


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,233
Number of Sequences: 5004
Number of extensions: 48114
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)