Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14i14
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 33 0.28
11_03_0082 - 9689245-9689952 32 0.49
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 31 0.86
04_03_0190 + 12448027-12450825 30 2.0
05_05_0391 - 24617389-24617508,24617854-24617919,24618156-246182... 29 2.6
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 2.6
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867... 29 3.5
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155... 29 4.6
06_03_0800 + 24709590-24710642 28 8.0
03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033... 28 8.0
03_05_0536 - 25357355-25357411,25357463-25357588,25357764-253578... 28 8.0
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 28 8.0
02_01_0182 + 1245577-1245670,1245928-1246017,1246258-1246290,124... 28 8.0
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 242 IQLLLCTTKSTFADRIDFTRTPPYAIQCLTKCFLSSSEKDIKSGYKLNI-LSLNA--SGK 412
+QLL+C + D R +I +T+C L S+ + S + N+ L +NA G
Sbjct: 713 LQLLICVMERRHQGYADLKRIAETSIGVVTQCCLYSNLSKLTSQFLTNLALKINAKLGGC 772
Query: 413 GLSGYNLFPLTVVLSFL 463
++ Y+ FP + FL
Sbjct: 773 NIALYSSFPCQIPRIFL 789
>11_03_0082 - 9689245-9689952
Length = 235
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 254 LCTTKSTFADRIDFTRTPPYAIQCLTK 334
+C+ KS+F D ID+T +PP A++ L +
Sbjct: 56 ICSGKSSFCDGIDYTSSPPPAVEELIR 82
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 31.1 bits (67), Expect = 0.86
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 186 VTKNWLIRCINEVALCDTTKYAVTVI 109
V KNW+++C++E DT Y +++I
Sbjct: 731 VDKNWVVKCLHETEHLDTLDYILSII 756
>04_03_0190 + 12448027-12450825
Length = 932
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = -1
Query: 411 LPDAFKDKILSLYPDLISFSEDERKHFVRHWIAYGGVLVKSMRSANVDFVVHN--NNCIT 238
LP+ KD L + S +RKH +R WIA G V+ ++ + H+ + I
Sbjct: 430 LPEYLKDCFL-FCSIFLENSMIKRKHLIRLWIAEG--FVEDRAGTTMEELAHDYLSELIR 486
Query: 237 YKEMQRLKEELRQGVRHVTKNWLIRCINEVALC 139
+Q +K V+H + ++R + ++LC
Sbjct: 487 RGMLQVMKRNENGRVKHCRMHCIVREVT-ISLC 518
>05_05_0391 -
24617389-24617508,24617854-24617919,24618156-24618204,
24618855-24618922,24619041-24619086,24619187-24619280,
24619373-24619435,24619722-24619844,24620370-24620403,
24621106-24621168,24621447-24621545,24622398-24622454
Length = 293
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -1
Query: 555 DVKREMKRKKRDLDSSQETIAELNETPAKVKRKDKTTVSGNKLYPDNPLPDAF 397
D +++K+K+++L + + AELN+ ++KRK++ + D P F
Sbjct: 49 DSSKDLKKKEKELQAME---AELNKRERELKRKEEAAAQAGIVIEDKNWPPFF 98
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -1
Query: 381 SLYPDLISFSEDERKHFVRHWIAYGGVLVKSMRSANVDFVVHN--NNCITYKEMQRLKEE 208
+++P+ +F+ RK +RHWIA G ++ + S V+ V N + +Q ++
Sbjct: 958 TIFPESYAFN---RKRLIRHWIAAG--YIQEVGSKTVEEVAEGYLNELVNRSLLQVVERN 1012
Query: 207 LRQGVRHVTKNWLIRCI 157
L VR + +IR +
Sbjct: 1013 LSGRVRRCRMHDIIRLL 1029
>03_02_0463 -
8673313-8673639,8674040-8674126,8674710-8674790,
8674896-8675048,8675129-8675185,8675293-8675569,
8675634-8675749,8676372-8676523,8676627-8676816,
8676935-8677345
Length = 616
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 420 DNPLPDAFKDKILSLYPDLISFSEDERKHFVRHWI 316
D LPD L LY D++ F E+K +V HW+
Sbjct: 229 DRNLPDVH----LGLYDDVLVFDNVEKKVYVIHWV 259
>02_02_0471 -
10714440-10714846,10714947-10715034,10715427-10715516,
10715614-10715727
Length = 232
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 552 VKREMKRKKRDLDSSQETIAELNETPAKVKRKDKTTVSGNK 430
+ E + KK DL I E P KV KD+ VSG K
Sbjct: 41 INGEFEEKKADLQPKVVEIYEAAPAPLKVLIKDRAKVSGIK 81
>06_03_0800 + 24709590-24710642
Length = 350
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 426 YPDNPLPDAFKDKILSLYPDLISFSEDERKHFVRHWIAYGGVLVKSMR 283
YPDN PD ++L+ + H V ++ GG LV+ MR
Sbjct: 269 YPDNVRPDGKGGYWIALHREKYELPFGPDSHLVAMRVSAGGKLVQQMR 316
>03_06_0524 -
34502286-34502609,34502998-34503084,34503280-34503360,
34503962-34504114,34504898-34504954,34505050-34505296,
34505412-34505527,34506074-34506225,34506713-34506902,
34506976-34507169,34507256-34507388
Length = 577
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 420 DNPLPDAFKDKILSLYPDLISFSEDERKHFVRHWI 316
D LPD L LY D++ F E+K V HW+
Sbjct: 201 DRNLPDIH----LGLYNDIVVFDHVEKKTHVIHWV 231
>03_05_0536 -
25357355-25357411,25357463-25357588,25357764-25357892,
25358015-25358164,25358253-25358373,25360946-25361247
Length = 294
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 345 ERKHFVRHWIAYGGVLVKSMR 283
ER+H V WIAY G+++ +R
Sbjct: 215 ERRHRVDKWIAYAGMMITVVR 235
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 438 GNKLYPDNPLPDAFKDKILSLYPD 367
G LY D PLPD+ + ++ S+Y D
Sbjct: 257 GAPLYADEPLPDSSEQELNSVYVD 280
>02_01_0182 +
1245577-1245670,1245928-1246017,1246258-1246290,
1246451-1246483,1246657-1246689,1246872-1246904,
1247073-1247105,1247237-1247286
Length = 132
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 212 SFNLCISLYVIQLLLCT--TKSTFADRIDFT-RTPPYAIQCLTKCFLSSSEKDIKSGYKL 382
SF LC+ L ++ LLCT T S A + F+ + P++ + L F S+S I +
Sbjct: 7 SFTLCLMLLLVAALLCTMNTISVEAAKNIFSLKYTPFSKRGLK--FGSASSCPIFGSGRS 64
Query: 383 NILSLNASGKGLSGYN 430
S+N G+ SGYN
Sbjct: 65 GYNSVNPDGR--SGYN 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,234
Number of Sequences: 37544
Number of extensions: 266391
Number of successful extensions: 732
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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