Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i14
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113259-1|AAM29264.1|  696|Drosophila melanogaster AT15112p pro...    31   2.0  
AE014297-1507|AAF54801.3|  806|Drosophila melanogaster CG17227-P...    31   2.0  
X89241-1|CAA61529.1|  773|Drosophila melanogaster MSL-2 protein.       29   6.0  

>AY113259-1|AAM29264.1|  696|Drosophila melanogaster AT15112p
           protein.
          Length = 696

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 13/66 (19%), Positives = 33/66 (50%)
 Frame = -1

Query: 351 EDERKHFVRHWIAYGGVLVKSMRSANVDFVVHNNNCITYKEMQRLKEELRQGVRHVTKNW 172
           E +    ++ +  +GG      + A++ F  + N  +   ++++L+   R+  RH+  +W
Sbjct: 619 EKDSSKLMQQFSQHGGCCTTEPQKADLVFYANTNEAL---DLEKLRTLYRRSCRHLNVSW 675

Query: 171 LIRCIN 154
           L  C++
Sbjct: 676 LQSCLD 681


>AE014297-1507|AAF54801.3|  806|Drosophila melanogaster CG17227-PA
           protein.
          Length = 806

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 13/66 (19%), Positives = 33/66 (50%)
 Frame = -1

Query: 351 EDERKHFVRHWIAYGGVLVKSMRSANVDFVVHNNNCITYKEMQRLKEELRQGVRHVTKNW 172
           E +    ++ +  +GG      + A++ F  + N  +   ++++L+   R+  RH+  +W
Sbjct: 729 EKDSSKLMQQFSQHGGCCTTEPQKADLVFYANTNEAL---DLEKLRTLYRRSCRHLNVSW 785

Query: 171 LIRCIN 154
           L  C++
Sbjct: 786 LQSCLD 791


>X89241-1|CAA61529.1|  773|Drosophila melanogaster MSL-2 protein.
          Length = 773

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 543 EMKRKKRDLDS-SQETIAELNETPAKVKRKDKTTVSGNKLYPDNPLPDAFKDKILS 379
           E K K++DL + S E   E ++ PA +KRK   T+  ++     P+P   K K+ S
Sbjct: 447 EAKEKEKDLHAISAELQKEDSDEPA-LKRKRTRTLKASQAAKIEPVPSEVKTKVQS 501


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,795,431
Number of Sequences: 53049
Number of extensions: 490065
Number of successful extensions: 1517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)