Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i14
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic letha...    31   1.0  
U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic letha...    31   1.0  
AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.     31   1.0  
AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.     31   1.0  
Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL132949-13|CAB70106.2|  425|Caenorhabditis elegans Hypothetical...    29   3.1  
AF197575-1|AAF18441.1|  425|Caenorhabditis elegans ASC-1 protein.      29   3.1  
Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    28   5.4  

>U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform b protein.
          Length = 158

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 263 TKSTFADRIDFTRTPPYAIQCLTKCFLSSSEKDIKSGYKLNILSLNASGKGLSGYNLFPL 442
           T+  F  RI   +T     +CL +  +   +K  KS YKL  + +N S    SG      
Sbjct: 60  TRFVFCCRIPCDQTSGTLEKCLCRVSIRKEQKGGKSYYKLGFVDINLSEYAASGVEGISR 119

Query: 443 TVVLS 457
           T +L+
Sbjct: 120 TYLLN 124


>U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform a protein.
          Length = 305

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 263 TKSTFADRIDFTRTPPYAIQCLTKCFLSSSEKDIKSGYKLNILSLNASGKGLSGYNLFPL 442
           T+  F  RI   +T     +CL +  +   +K  KS YKL  + +N S    SG      
Sbjct: 60  TRFVFCCRIPCDQTSGTLEKCLCRVSIRKEQKGGKSYYKLGFVDINLSEYAASGVEGISR 119

Query: 443 TVVLS 457
           T +L+
Sbjct: 120 TYLLN 124


>AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.
          Length = 158

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 263 TKSTFADRIDFTRTPPYAIQCLTKCFLSSSEKDIKSGYKLNILSLNASGKGLSGYNLFPL 442
           T+  F  RI   +T     +CL +  +   +K  KS YKL  + +N S    SG      
Sbjct: 60  TRFVFCCRIPCDQTSGTLEKCLCRVSIRKEQKGGKSYYKLGFVDINLSEYAASGVEGISR 119

Query: 443 TVVLS 457
           T +L+
Sbjct: 120 TYLLN 124


>AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.
          Length = 305

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 263 TKSTFADRIDFTRTPPYAIQCLTKCFLSSSEKDIKSGYKLNILSLNASGKGLSGYNLFPL 442
           T+  F  RI   +T     +CL +  +   +K  KS YKL  + +N S    SG      
Sbjct: 60  TRFVFCCRIPCDQTSGTLEKCLCRVSIRKEQKGGKSYYKLGFVDINLSEYAASGVEGISR 119

Query: 443 TVVLS 457
           T +L+
Sbjct: 120 TYLLN 124


>Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical
           protein K07C5.6 protein.
          Length = 647

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 549 KREMKRKKRDLDSSQETIAELNETPAKVKRKDKTTVSGNKLYPDNPLPDAFKDK 388
           K E+K +K   DS ++ +AE N      + K+K  VS   + P  P  D  K+K
Sbjct: 463 KTEVKEEKEKEDSIKDEVAEENSDNDNDEEKEK--VSEKSISPSPPSDDEEKEK 514


>AL132949-13|CAB70106.2|  425|Caenorhabditis elegans Hypothetical
           protein Y53F4B.15 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
 Frame = -1

Query: 540 MKRKKRDLDSSQETIAELNETPAKVKRKDKTT--VSGNKLYPDNPLPDAFKDKILSLY-P 370
           +K+      ++ E   +L E  A  +R+ K     S      ++P   A   + L L   
Sbjct: 107 LKQISSSYQNATEFRNKLLEADADTERRTKVNDLQSDYSTIENSPFLSASDREALKLRRE 166

Query: 369 DLISFSEDERKHFVRHWIAYGGVLVKSMRSANVDFVVHNNNCITYKEMQRLKEELR 202
           +L +  E ERK FV      GGV+ +  R +  + +   N+ +  + M+R+ E+ R
Sbjct: 167 ELKALREKERKKFVVSLDFDGGVVHEMTRRSGTEALQDKNDPVIQRIMERVDEKHR 222


>AF197575-1|AAF18441.1|  425|Caenorhabditis elegans ASC-1 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
 Frame = -1

Query: 540 MKRKKRDLDSSQETIAELNETPAKVKRKDKTT--VSGNKLYPDNPLPDAFKDKILSLY-P 370
           +K+      ++ E   +L E  A  +R+ K     S      ++P   A   + L L   
Sbjct: 107 LKQISSSYQNATEFRNKLLEADADTERRTKVNDLQSDYSTIENSPFLSASDREALKLRRE 166

Query: 369 DLISFSEDERKHFVRHWIAYGGVLVKSMRSANVDFVVHNNNCITYKEMQRLKEELR 202
           +L +  E ERK FV      GGV+ +  R +  + +   N+ +  + M+R+ E+ R
Sbjct: 167 ELKALREKERKKFVVSLDFDGGVVHEMTRRSGTEALQDKNDPVIQRIMERVDEKHR 222


>Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.2 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 309 GGVLVKSMRSANVDFVVHNNNCITYKEMQRLKEE 208
           G  + ++  SANV+  +HN  C  YK   +L E+
Sbjct: 87  GADMTETDHSANVELFMHNTECNYYKIFAKLTEK 120


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical protein
            Y37A1B.1a protein.
          Length = 1222

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -1

Query: 555  DVKREMKRKKRDLDSS-QETIAELNETPAKVK 463
            + K E+ +KK+D+DS   ++  +LNET A++K
Sbjct: 1084 EAKAEIDKKKKDIDSHYHKSNKKLNETSAQLK 1115


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
            protein Y37A1B.1a protein.
          Length = 1222

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -1

Query: 555  DVKREMKRKKRDLDSS-QETIAELNETPAKVK 463
            + K E+ +KK+D+DS   ++  +LNET A++K
Sbjct: 1084 EAKAEIDKKKKDIDSHYHKSNKKLNETSAQLK 1115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,789,825
Number of Sequences: 27780
Number of extensions: 274007
Number of successful extensions: 936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)