Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i09
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   223   3e-59
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   210   1e-55
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.3  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   3.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   3.0  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   5.3  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.3  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   9.3  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  223 bits (544), Expect = 3e-59
 Identities = 105/154 (68%), Positives = 125/154 (81%)
 Frame = -3

Query: 763 KNIGXKVEKELREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH 584
           K    K+E+EL     D+L +L+KHLIP A++ ESKVFY KMKGDYYRYLAE A GE R 
Sbjct: 85  KEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQ 144

Query: 583 SVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDA 404
              + S + Y+ A EI+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+A
Sbjct: 145 HSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEA 204

Query: 403 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 302
           I+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 205 ISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  210 bits (514), Expect = 1e-55
 Identities = 99/154 (64%), Positives = 121/154 (78%)
 Frame = -3

Query: 763 KNIGXKVEKELREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH 584
           K    K+E EL +  +DVL +L+KHLIP A+  ESKVFY KMKGDYYRYLAE   GE   
Sbjct: 84  KEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCK 143

Query: 583 SVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDA 404
              + S +AY+ A +I+ A++ PT P+RLGLALNFSVFYYEIL+SP+ AC LAKQ FD+A
Sbjct: 144 EAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEA 203

Query: 403 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 302
           I+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 204 ISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 149 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 277
           L + SV+I   +TFS V+R L  +T   + VCW  C   L+ A+
Sbjct: 43  LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 622  RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 476
            RY+  ++   E R    ED+++A + ++  + A +QP H  I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 703  LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 566
            +++K  IP++   E+K  Y +  GD+     +L E A  E  H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 120 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 28
           FA  LPVP   K C  F  F+  L  +W+ D+
Sbjct: 31  FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -3

Query: 565 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 392
           Q+   D  E   +   P H        L F S  Y ++    D   QLA Q F     ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474

Query: 391 DTLNEDSYKDSTLIMQLLRDN 329
           + L  +++  S  ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 58  YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 183
           ++T   D   +F + G++R  RL+TF       GFG    PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 512 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 613
           C L+F L + K+ L+    I+Y  + GFS  H C
Sbjct: 46  CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,949
Number of Sequences: 5004
Number of extensions: 60704
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)