Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14i09
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 222 2e-58
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 222 3e-58
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 221 4e-58
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 219 2e-57
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 217 6e-57
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 214 8e-56
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 129 6e-35
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 118 7e-27
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 3.2
02_02_0106 + 6814391-6817007,6817086-6817462 29 4.2
04_04_1588 - 34633057-34633824 28 7.3
01_07_0228 - 42154400-42154498,42155120-42155196,42156341-421564... 28 7.3
06_03_1237 + 28602250-28604196 28 9.7
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 222 bits (543), Expect = 2e-58
Identities = 106/159 (66%), Positives = 126/159 (79%)
Frame = -3
Query: 763 KNIGXKVEKELREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH 584
K+ K+E EL + +L LL+ HL+P ++ PESKVFYLKMKGDYYRYLAE TG R
Sbjct: 90 KDYRGKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERK 149
Query: 583 SVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDA 404
E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+A
Sbjct: 150 DAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 209
Query: 403 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 287
I+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD D E
Sbjct: 210 ISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 222 bits (542), Expect = 3e-58
Identities = 105/152 (69%), Positives = 123/152 (80%)
Frame = -3
Query: 763 KNIGXKVEKELREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH 584
K K+E EL + +L LLD HL+P ++ PESKVFYLKMKGDYYRYLAE TG R
Sbjct: 308 KEYRGKIETELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERK 367
Query: 583 SVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDA 404
E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+A
Sbjct: 368 DAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 427
Query: 403 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 308
I+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 428 ISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 221 bits (541), Expect = 4e-58
Identities = 109/163 (66%), Positives = 125/163 (76%), Gaps = 1/163 (0%)
Frame = -3
Query: 763 KNIGXKVEKELREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH 584
K K+E EL + +L LLD HL+P ++ ESKVFYLKMKGDY+RYLAE TG R
Sbjct: 84 KEYRGKIEAELSKICDGILKLLDSHLVPSSTAAESKVFYLKMKGDYHRYLAEFKTGAERK 143
Query: 583 SVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDA 404
E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPDKAC LAKQAFD+A
Sbjct: 144 EAAESTMVAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEA 203
Query: 403 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEPAE 278
I+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD T+ GDE E
Sbjct: 204 ISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 219 bits (536), Expect = 2e-57
Identities = 103/154 (66%), Positives = 120/154 (77%)
Frame = -3
Query: 748 KVEKELREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVED 569
K+E EL +L LLD HL+P A ESKVFYLKMKGDY+RYLAE +G+ R E
Sbjct: 72 KIEAELARICDGILALLDSHLVPSAGAAESKVFYLKMKGDYHRYLAEFKSGDERKQAAES 131
Query: 568 SQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELD 389
+ AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD
Sbjct: 132 TMNAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELD 191
Query: 388 TLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 287
+L E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 192 SLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 217 bits (531), Expect = 6e-57
Identities = 105/159 (66%), Positives = 122/159 (76%)
Frame = -3
Query: 763 KNIGXKVEKELREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH 584
K ++E EL + +L LLD HL+P A+ ESKVFYLKMKGDY+RYLAE +G R
Sbjct: 89 KEYRSRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGAERK 148
Query: 583 SVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDA 404
E++ AY+ A +I+ A + THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFDDA
Sbjct: 149 EAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDA 208
Query: 403 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 287
IAELDTL E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 209 IAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 214 bits (522), Expect = 8e-56
Identities = 102/154 (66%), Positives = 121/154 (78%)
Frame = -3
Query: 748 KVEKELREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVED 569
+VE EL +L LLD+ L+P A+ ++KVFYLKMKGDY+RYLAE TG R +
Sbjct: 99 RVEAELSNICAGILRLLDERLVPAAAAVDAKVFYLKMKGDYHRYLAEFKTGAERKDAADA 158
Query: 568 SQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELD 389
+ AYQ A +I+ ++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD
Sbjct: 159 TLAAYQAAQDIAMKELSPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELD 218
Query: 388 TLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 287
TL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 219 TLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 129 bits (312), Expect(2) = 6e-35
Identities = 61/93 (65%), Positives = 73/93 (78%)
Frame = -3
Query: 547 AFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSY 368
A + ++ + PT PIRLGLALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++Y
Sbjct: 146 ASKTAQTDLTPTDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENY 205
Query: 367 KDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 269
KDSTLIMQLLRDNL LW SD D D+ E D
Sbjct: 206 KDSTLIMQLLRDNLALWNSDMADDADDIRERTD 238
Score = 36.3 bits (80), Expect(2) = 6e-35
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = -3
Query: 637 KGDYYRYLAEVATGETRHSVVEDSQKAYQ 551
KGDYYRYLAE TG + V E S AY+
Sbjct: 85 KGDYYRYLAEFKTGTEKIEVSELSLNAYE 113
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 118 bits (283), Expect = 7e-27
Identities = 66/150 (44%), Positives = 95/150 (63%)
Frame = -3
Query: 748 KVEKELREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVED 569
KVE ELR +VL ++ H +P A++ E+ VF+ KMKGDYYRYLAE +TG + + +
Sbjct: 86 KVEDELRAVCNEVLSIIAIHCLPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAATDQ 145
Query: 568 SQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELD 389
S AYQ A+ ++ FS+ EI+NSP++A Q+AKQA D+A AE++
Sbjct: 146 SLMAYQ-AWPCAQL---------------FSLL--EIMNSPERASQVAKQALDEATAEIN 187
Query: 388 TLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 299
+ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 188 SAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -3
Query: 478 SVFYYEILNSPDKACQLAKQAFDDAIAEL-DTLNEDSYKDSTLIMQLLRD-NLTLWTSDT 305
S Y + PD + K++FD+ + E + +Y S + ++ D LWT +
Sbjct: 676 SFLTYPSMKVPDNFIYIHKRSFDECMVECRSNCSCVAYAYSNISSGIIDDTRCLLWTGEL 735
Query: 304 QGDGDEPAEGGDN*YLAA 251
D ++ +GG+N Y+ A
Sbjct: 736 I-DMEKVTQGGENLYIRA 752
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 218 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 60
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 230 KCVCWGECGEILVVAALGRLVAIALSV*RPK 322
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
>01_07_0228 -
42154400-42154498,42155120-42155196,42156341-42156425,
42156511-42156956,42157070-42157194,42157273-42157523
Length = 360
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -3
Query: 733 LREXXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAY 554
L + YD +G D +I + P+ + K KGDY LAEV H V++D K+
Sbjct: 160 LTKSFYDFIGSTDCTVIKLRNYPDD--WDEKKKGDYLLTLAEV-----NHGVLKDKLKSR 212
Query: 553 QD 548
D
Sbjct: 213 DD 214
>06_03_1237 + 28602250-28604196
Length = 648
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = -3
Query: 706 GLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKA 527
GL+D + + SKVFY + + Y Y + +A G H ++ +++ +++A
Sbjct: 314 GLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIA-GLASHGRASEAIALFKEM--VNRA 370
Query: 526 KMQPTHPIRLGL 491
++P H +G+
Sbjct: 371 NVEPNHVTFIGV 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,496,079
Number of Sequences: 37544
Number of extensions: 393147
Number of successful extensions: 1070
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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