Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i08
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   219   3e-58
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   219   3e-58
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    48   1e-06
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   3.7  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    26   6.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.6  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  219 bits (536), Expect = 3e-58
 Identities = 102/127 (80%), Positives = 115/127 (90%)
 Frame = -1

Query: 683 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 504
           SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPK
Sbjct: 9   SKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPK 68

Query: 503 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 324
           RLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+L
Sbjct: 69  RLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVL 128

Query: 323 IRQRHIR 303
           I QRHIR
Sbjct: 129 IFQRHIR 135



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 31/41 (75%), Positives = 37/41 (90%)
 Frame = -3

Query: 156 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 34
           KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 138 KQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  219 bits (535), Expect = 3e-58
 Identities = 102/127 (80%), Positives = 115/127 (90%)
 Frame = -1

Query: 683 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 504
           SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPK
Sbjct: 9   SKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPK 68

Query: 503 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 324
           RLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+L
Sbjct: 69  RLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVL 128

Query: 323 IRQRHIR 303
           I QRHIR
Sbjct: 129 IFQRHIR 135



 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = -3

Query: 156 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 22
           KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR   G
Sbjct: 138 KQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEG 182


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 28/110 (25%), Positives = 49/110 (44%)
 Frame = -1

Query: 632 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 453
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N LL +L  +G+
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 452 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 303
           L  K    D      +     RRL   + K  +++ +  A  LI Q H+R
Sbjct: 88  LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVR 137


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 437 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 306
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 262 QIQAAAIRAPLLSHRICLCRIKILA*WMDF 351
           Q +A  +++ LL+H+ C C +KI +   DF
Sbjct: 60  QQEAFRLKSQLLAHQGCQCSVKIRSVLTDF 89


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -3

Query: 408  D*GLLGASSADAGVQSWPGEVHPSCQNFDP 319
            D GLLGA+S   GVQS PG   P      P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSP 1549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,126
Number of Sequences: 5004
Number of extensions: 58684
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)