Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14i08
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 193 1e-49
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 191 4e-49
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 190 8e-49
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 144 7e-35
07_03_1357 - 25982861-25983068,25983354-25983361 60 2e-09
07_03_1358 - 25984897-25984997,25985623-25985650 46 4e-05
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 33 0.32
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 30 1.7
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 5.2
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 28 6.8
04_04_0667 + 27097741-27098085,27098203-27098547 28 6.8
03_06_0069 - 31449319-31450368 28 6.8
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 6.8
07_03_0720 - 20926363-20926794 28 9.0
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 193 bits (471), Expect = 1e-49
Identities = 91/140 (65%), Positives = 112/140 (80%)
Frame = -1
Query: 722 ARQDGEQQSTVGISKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKA 543
A +D + + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR
Sbjct: 214 ATRDNTAKLNLAYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNN 273
Query: 542 ARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFK 363
AR LLTL+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFK
Sbjct: 274 ARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFK 333
Query: 362 AGLAKSIHHARILIRQRHIR 303
AG+AKSIHHAR+LIRQRHIR
Sbjct: 334 AGMAKSIHHARVLIRQRHIR 353
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = -3
Query: 156 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 22
+Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K G
Sbjct: 356 RQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASG 400
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 191 bits (466), Expect = 4e-49
Identities = 91/132 (68%), Positives = 109/132 (82%)
Frame = -1
Query: 698 STVGISKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 519
ST KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+
Sbjct: 29 STALDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLD 88
Query: 518 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 339
EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIH
Sbjct: 89 EKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIH 148
Query: 338 HARILIRQRHIR 303
HAR+LIRQRHIR
Sbjct: 149 HARVLIRQRHIR 160
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = -3
Query: 156 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 22
+Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K G
Sbjct: 163 RQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASG 207
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 190 bits (464), Expect = 8e-49
Identities = 89/126 (70%), Positives = 107/126 (84%)
Frame = -1
Query: 680 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 501
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 12 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 71
Query: 500 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 321
+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LI
Sbjct: 72 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 131
Query: 320 RQRHIR 303
RQRHIR
Sbjct: 132 RQRHIR 137
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = -3
Query: 156 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 22
+Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K G
Sbjct: 140 RQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASG 184
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 144 bits (349), Expect = 7e-35
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -1
Query: 680 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 501
KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P+R
Sbjct: 12 KTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNPRR 60
Query: 500 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 321
+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LI
Sbjct: 61 IFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLI 120
Query: 320 RQRHI 306
RQ HI
Sbjct: 121 RQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/45 (64%), Positives = 33/45 (73%)
Frame = -3
Query: 156 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 22
+Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN + G
Sbjct: 6 RQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGG 50
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 680 KTYVTPRRPFEKARLDQELKIIGEYG 603
KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 12 KTFKKPRRPYEKERLDAELKLVGEYG 37
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 32.7 bits (71), Expect = 0.32
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 222 FNKVEV-QVVYMNKTDSGSSN*SATVISPNMPLPDQNSGMMDGLRQASFEHLRLQTTLQE 398
F KV+ V + D GS S + + P M LP QN+G+M+ ASF +LQ ++ +
Sbjct: 20 FLKVKAAHVKAKGRNDCGSWRKSGSRVDPPMVLPQQNAGLMEADGSASFIR-KLQLSVSD 78
Query: 399 VL 404
L
Sbjct: 79 GL 80
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = -1
Query: 734 QCVRARQDGEQQSTVGISKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 582
QC ++ +DG + +G++ T V + + +++KIIG YG R ++++
Sbjct: 324 QCAKSVRDGGKAVMIGLAATNVMGEVDITRL-VRRQVKIIGSYGARARQDL 373
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 407 IEDFLERRLQTQVFKAGLAKSIHHAR 330
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 390 ASSADAGVQSWPGEVHPSCQNFDPAKAYS 304
A+S G SW CQ++DPAK Y+
Sbjct: 394 AASLVKGNLSWRSREFLDCQSYDPAKVYN 422
>04_04_0667 + 27097741-27098085,27098203-27098547
Length = 229
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 443 KQMKLDYVLGLKIEDFLERRLQT-QVFKAGLAKSIHHARILIRQRHIR*DNSGALIAAA 270
KQ++ DY D L R+++ + K L +H R +R+R R N GA AA
Sbjct: 82 KQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGNGGAATTAA 140
>03_06_0069 - 31449319-31450368
Length = 349
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 335 HDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 466
HD +S G L P+SA +P + SDQ H VS+ P Y+
Sbjct: 237 HDVLSSLG-LKLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYD 279
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 632 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 510
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>07_03_0720 - 20926363-20926794
Length = 143
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = -3
Query: 396 LGASSADAGVQSWPGEVHPSCQNFDPAKA-YSVR*Q----WRSNCCC 271
+G DAG +WPG V S D A A + R + WR + CC
Sbjct: 95 IGGRGEDAGATAWPGLVQISGNGDDVAAAVHRARSRATMTWRRSRCC 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,077,159
Number of Sequences: 37544
Number of extensions: 423695
Number of successful extensions: 1067
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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