Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i08
         (743 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p pro...   244   1e-64
AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB...   244   1e-64
AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD...   244   1e-64
AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA...   244   1e-64
X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal prot...   147   2e-35
AY071534-1|AAL49156.1|  181|Drosophila melanogaster RE57564p pro...    40   0.004
AE013599-2494|AAF57847.2|  181|Drosophila melanogaster CG4866-PA...    40   0.004
U65589-1|AAC47273.1|  694|Drosophila melanogaster Dfz2 protein.        29   8.8  
BT023785-1|AAZ41794.1|  694|Drosophila melanogaster LD10629p pro...    29   8.8  
AE014296-3112|AAF49185.2|  694|Drosophila melanogaster CG9739-PB...    29   8.8  
AE014296-3111|AAF49184.1|  694|Drosophila melanogaster CG9739-PA...    29   8.8  

>AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p
           protein.
          Length = 137

 Score =  244 bits (596), Expect = 1e-64
 Identities = 117/127 (92%), Positives = 123/127 (96%)
 Frame = -1

Query: 683 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 504
           SKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARELLTL+EKD K
Sbjct: 11  SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEK 70

Query: 503 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 324
           RLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GLAKSIHHAR+L
Sbjct: 71  RLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 130

Query: 323 IRQRHIR 303
           IRQRHIR
Sbjct: 131 IRQRHIR 137


>AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB,
           isoform B protein.
          Length = 137

 Score =  244 bits (596), Expect = 1e-64
 Identities = 117/127 (92%), Positives = 123/127 (96%)
 Frame = -1

Query: 683 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 504
           SKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARELLTL+EKD K
Sbjct: 11  SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEK 70

Query: 503 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 324
           RLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GLAKSIHHAR+L
Sbjct: 71  RLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 130

Query: 323 IRQRHIR 303
           IRQRHIR
Sbjct: 131 IRQRHIR 137


>AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD,
           isoform D protein.
          Length = 195

 Score =  244 bits (596), Expect = 1e-64
 Identities = 117/127 (92%), Positives = 123/127 (96%)
 Frame = -1

Query: 683 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 504
           SKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARELLTL+EKD K
Sbjct: 11  SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEK 70

Query: 503 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 324
           RLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GLAKSIHHAR+L
Sbjct: 71  RLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 130

Query: 323 IRQRHIR 303
           IRQRHIR
Sbjct: 131 IRQRHIR 137



 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 41/46 (89%), Positives = 43/46 (93%)
 Frame = -3

Query: 159 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 22
           RKQVVNIPSF+VRLDS KHIDFSLKSPFGGGRPGRVKRKNL+K  G
Sbjct: 139 RKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQG 184


>AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA,
           isoform A protein.
          Length = 195

 Score =  244 bits (596), Expect = 1e-64
 Identities = 117/127 (92%), Positives = 123/127 (96%)
 Frame = -1

Query: 683 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 504
           SKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARELLTL+EKD K
Sbjct: 11  SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEK 70

Query: 503 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 324
           RLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GLAKSIHHAR+L
Sbjct: 71  RLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 130

Query: 323 IRQRHIR 303
           IRQRHIR
Sbjct: 131 IRQRHIR 137



 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 41/46 (89%), Positives = 43/46 (93%)
 Frame = -3

Query: 159 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 22
           RKQVVNIPSF+VRLDS KHIDFSLKSPFGGGRPGRVKRKNL+K  G
Sbjct: 139 RKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQG 184


>X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal protein
           protein.
          Length = 197

 Score =  147 bits (356), Expect = 2e-35
 Identities = 80/124 (64%), Positives = 92/124 (74%)
 Frame = -1

Query: 683 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 504
           SKTYVTPRRP+EKARLDQELKIIGEYGL+  R V  VKY LA+IRK ARELLTL+EKD K
Sbjct: 11  SKTYVTPRRPYEKARLDQELKIIGEYGLQQARSV-AVKYALAKIRKVARELLTLDEKDAK 69

Query: 503 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 324
           RLF+G +L+RRLVRIGVL +   +     G +    L         +AGLAKSIHHAR+L
Sbjct: 70  RLFQGKSLVRRLVRIGVL-KSPHEARLRAGSEDSGLLGASSADAGVQAGLAKSIHHARVL 128

Query: 323 IRQR 312
           IRQR
Sbjct: 129 IRQR 132


>AY071534-1|AAL49156.1|  181|Drosophila melanogaster RE57564p
           protein.
          Length = 181

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 25/110 (22%), Positives = 51/110 (46%)
 Frame = -1

Query: 632 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 453
           +E KI+  + ++ + +  +       IR+ A  +  L+  +P +      LL +L  +GV
Sbjct: 28  KENKILRRFHIQKREDYTKYNKLSREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGV 87

Query: 452 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 303
            ++ Q+ L+    +    F  RRL   + K  +++ +  A  LI   H+R
Sbjct: 88  SND-QLTLETAAKISASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVR 136


>AE013599-2494|AAF57847.2|  181|Drosophila melanogaster CG4866-PA
           protein.
          Length = 181

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 25/110 (22%), Positives = 51/110 (46%)
 Frame = -1

Query: 632 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 453
           +E KI+  + ++ + +  +       IR+ A  +  L+  +P +      LL +L  +GV
Sbjct: 28  KENKILRRFHIQKREDYTKYNKLSREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGV 87

Query: 452 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 303
            ++ Q+ L+    +    F  RRL   + K  +++ +  A  LI   H+R
Sbjct: 88  SND-QLTLETAAKISASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVR 136


>U65589-1|AAC47273.1|  694|Drosophila melanogaster Dfz2 protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 12  GSATLXPCGGSSS*HVQDDLHRTEISERSQCACQSPGAQ*MMGCSQLACGQLLSDKRLIL 191
           GS +  PC G +S + Q+        +   C+C+SP     +G  QL   Q  S   ++ 
Sbjct: 225 GSTSTKPCRGRNSKNCQNPQGEKASGKECSCSCRSPLI--FLGKEQLL--QQQSQMPMMH 280

Query: 192 *EHIWFQDIEFNKV 233
             H W+ ++   ++
Sbjct: 281 HPHHWYMNLTVQRI 294


>BT023785-1|AAZ41794.1|  694|Drosophila melanogaster LD10629p
           protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 12  GSATLXPCGGSSS*HVQDDLHRTEISERSQCACQSPGAQ*MMGCSQLACGQLLSDKRLIL 191
           GS +  PC G +S + Q+        +   C+C+SP     +G  QL   Q  S   ++ 
Sbjct: 225 GSTSTKPCRGRNSKNCQNPQGEKASGKECSCSCRSPLI--FLGKEQLL--QQQSQMPMMH 280

Query: 192 *EHIWFQDIEFNKV 233
             H W+ ++   ++
Sbjct: 281 HPHHWYMNLTVQRI 294


>AE014296-3112|AAF49185.2|  694|Drosophila melanogaster CG9739-PB,
           isoform B protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 12  GSATLXPCGGSSS*HVQDDLHRTEISERSQCACQSPGAQ*MMGCSQLACGQLLSDKRLIL 191
           GS +  PC G +S + Q+        +   C+C+SP     +G  QL   Q  S   ++ 
Sbjct: 225 GSTSTKPCRGRNSKNCQNPQGEKASGKECSCSCRSPLI--FLGKEQLL--QQQSQMPMMH 280

Query: 192 *EHIWFQDIEFNKV 233
             H W+ ++   ++
Sbjct: 281 HPHHWYMNLTVQRI 294


>AE014296-3111|AAF49184.1|  694|Drosophila melanogaster CG9739-PA,
           isoform A protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 12  GSATLXPCGGSSS*HVQDDLHRTEISERSQCACQSPGAQ*MMGCSQLACGQLLSDKRLIL 191
           GS +  PC G +S + Q+        +   C+C+SP     +G  QL   Q  S   ++ 
Sbjct: 225 GSTSTKPCRGRNSKNCQNPQGEKASGKECSCSCRSPLI--FLGKEQLL--QQQSQMPMMH 280

Query: 192 *EHIWFQDIEFNKV 233
             H W+ ++   ++
Sbjct: 281 HPHHWYMNLTVQRI 294


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,021,665
Number of Sequences: 53049
Number of extensions: 699751
Number of successful extensions: 1927
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)