Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i08
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   228   3e-60
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    34   0.12 
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   6.1  
Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  228 bits (558), Expect = 3e-60
 Identities = 108/127 (85%), Positives = 119/127 (93%)
 Frame = -1

Query: 683 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 504
           SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTLE+KDPK
Sbjct: 9   SKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPK 68

Query: 503 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 324
           RLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHARIL
Sbjct: 69  RLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARIL 128

Query: 323 IRQRHIR 303
           I+Q HIR
Sbjct: 129 IKQHHIR 135



 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 37/46 (80%), Positives = 43/46 (93%)
 Frame = -3

Query: 159 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 22
           R+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG G
Sbjct: 137 RRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKGDG 182


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = -1

Query: 593 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 417
           KRE + +  TLA + R+ A  +  L E DP R      +L +    G++      L+ + 
Sbjct: 40  KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98

Query: 416 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 303
            +    F  RRL   +   G+ +S+  A  L+ Q H+R
Sbjct: 99  KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVR 136


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 383 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 517
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


>Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical
           protein F31F6.1 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = -1

Query: 611 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE---GNALLRRLV-RIGVLDE 444
           E G       +R  + LAR +   R   TL EKD +++F+   G   ++R++ R G LD+
Sbjct: 106 ECGKMKSVSQFRTVFHLARCKLGNRMSPTLIEKDFEKIFQQYFGMLSMQRVLGRTGTLDQ 165

Query: 443 KQMKLDYVLGLKIEDFLERRLQTQV-FKAGLAKSIHHARIL 324
              K  +   +  E+   R L T V    G    + H R+L
Sbjct: 166 LFAKCSFEELMPAENV--RSLGTPVELSGGSVTVLPHRRVL 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,518,082
Number of Sequences: 27780
Number of extensions: 345839
Number of successful extensions: 941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)