Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i04
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...   156   4e-39
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    29   0.94 
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   6.6  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.6  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.7  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score =  156 bits (378), Expect = 4e-39
 Identities = 69/99 (69%), Positives = 79/99 (79%)
 Frame = -1

Query: 672 KMERKFFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDT 493
           K     F  RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGITW+++T
Sbjct: 9   KKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWDEET 68

Query: 492 LFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 376
           LF YLENPKKYIPGTKM FAG KK  +R ++I YLK AT
Sbjct: 69  LFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 440 YLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 306
           +L   +R  S+++ +  SNLL  N  +++N   SIF +    Y L
Sbjct: 326 FLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 515 PLALLASEYENPAAWPVFRPKNP 583
           PL LL + +++PA W V +  NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 392 ISNLLPSNFKVIENSIRSIFHNISGIYFL 306
           +S+L  + F+ I+N  +SI++   GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 69  FCEKTITKLTRSINNLTFNHSQHCQESINHTIHYVPGTY 185
           F + T+  L      L   HS HC+ +    + ++PGT+
Sbjct: 657 FSKDTLFILNVESPCLMLQHSYHCKPNSKLNVFWMPGTH 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,742
Number of Sequences: 5004
Number of extensions: 68711
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)