Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14i04
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760 141 5e-34
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386... 80 4e-21
05_07_0024 + 27125474-27125764 31 0.74
03_04_0184 - 18210875-18212065 29 3.0
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 29 3.9
08_02_0636 + 19567654-19568859 29 5.2
04_04_1582 - 34590698-34591199,34593849-34594690 29 5.2
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385 28 6.9
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 28 6.9
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 28 6.9
10_08_0223 - 15986763-15987575 28 9.1
>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
Length = 112
Score = 141 bits (342), Expect = 5e-34
Identities = 62/99 (62%), Positives = 74/99 (74%)
Frame = -1
Query: 672 KMERKFFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDT 493
K K F +CAQCHTV+ G HK GPNL+G FGR++G G+SYS ANK + W ++T
Sbjct: 13 KAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENT 72
Query: 492 LFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 376
L++YL NPKKYIPGTKMVF GLKK ERADLI+YLK AT
Sbjct: 73 LYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEAT 111
>01_06_1583 +
38436958-38437069,38438167-38438300,38438542-38438608,
38438900-38438937,38439302-38439391
Length = 146
Score = 79.8 bits (188), Expect(2) = 4e-21
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = -1
Query: 660 KFFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEY 481
K F +CA CH V+ HK GPNL+G FGR++G A GFSY +K + W ++TL++Y
Sbjct: 17 KIFRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSGDKIVPVIWEENTLYDY 76
Query: 480 LENPKKY 460
L PKK+
Sbjct: 77 LLTPKKH 83
Score = 39.5 bits (88), Expect(2) = 4e-21
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = -1
Query: 465 KYIPGTKMVFAGLKKANERADLIAYLKSAT 376
KY P KM F GLK+ +RADLIAYLK+AT
Sbjct: 117 KYTPA-KMGFNGLKQPQDRADLIAYLKNAT 145
>05_07_0024 + 27125474-27125764
Length = 96
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 724 CYINYKNFKMGVPAGNAENGKKIFCTTMCPVPHC 623
C+ YK N+ NGKK+F T P+P C
Sbjct: 63 CFCQYKKDPNMKKYVNSPNGKKVFATCKVPLPKC 96
>03_04_0184 - 18210875-18212065
Length = 396
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 270 AEYITDHTDWAK*EVDSRNVMENASYGIFYYFKITW*QI*DR 395
A+ I +H WA E ++N N S G Y +K+ W + D+
Sbjct: 258 ADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQ 299
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 569 EKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRNTSL 453
+ L RLQDS TP P+K + L+ N+ P TS+
Sbjct: 304 KNLERLQDSITPKPVKPPSTPNTVALAANMAPDPVTTSV 342
>08_02_0636 + 19567654-19568859
Length = 401
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 469 QEIHPWNQDGIC-WTQEGK 416
QE+ PW++DG+C W E K
Sbjct: 358 QEVFPWSRDGLCPWKYETK 376
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -1
Query: 618 AGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKYIPG 451
AGG K G G G G+ S+ + KGI W +D +L +KY G
Sbjct: 238 AGGGKKGGGGGGGGGGGGHGEKGSAKSSEQERRKGIAWTEDEHRLFLLGLEKYGKG 293
>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
Length = 157
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 590 FG-PTLCLPPASTVWHWA 640
FG PTLCLPP +T W A
Sbjct: 21 FGMPTLCLPPIATYWSHA 38
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 413 SFAFLSPANTILVPGMYFLGFSRYSKRVSSFHVMPLALLASEYEN 547
SF P N LVP Y+ G+ R K + ++P+ +++ N
Sbjct: 207 SFCLADPGNAFLVPSPYYPGWDRDIKWRTGIELIPVPCRSTDNFN 251
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 584 MDSLAEKLARLQDSHTP-MPIKLRALHGMTTLSLNILRIPRNTSLEPRWYLLD 429
+D +A+ A DSH+P +P+ L LHG + ++ +P S W L D
Sbjct: 818 VDGIADYCAL--DSHSPAVPLHLVELHGSLCMVRDLRHLPHGESCLEIWALRD 868
>10_08_0223 - 15986763-15987575
Length = 270
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 615 GGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 502
GG G +G +G +G AG Y ++ G TWN
Sbjct: 40 GGGGGGGGGTNGGWGSGSGAGAGAGYGESGGDSGNTWN 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,208,234
Number of Sequences: 37544
Number of extensions: 400088
Number of successful extensions: 993
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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