Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i04
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   4.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   4.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   4.0  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   4.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   4.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   7.1  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 750 FGKPKKIWAVTLIIKIL 700
           +GKP  IWA  +I+ IL
Sbjct: 89  YGKPVDIWACGVILYIL 105


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 548 PAAWPVFRPKNPCRFGPTL 604
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 548 PAAWPVFRPKNPCRFGPTL 604
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 548 PAAWPVFRPKNPCRFGPTL 604
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 548 PAAWPVFRPKNPCRFGPTL 604
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 548 PAAWPVFRPKNPCRFGPTL 604
           P ++P F P N  RF P+L
Sbjct: 370 PTSFPRFIPPNAYRFRPSL 388


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 235 VSSKSQHNHLQLLFVNTYVPG 173
           + +K++ +H+Q L  NT  PG
Sbjct: 167 LKTKNECDHVQFLITNTSGPG 187


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 235 VSSKSQHNHLQLLFVNTYVPG 173
           + +K++ +H+Q L  NT  PG
Sbjct: 167 LKTKNECDHVQFLITNTSGPG 187


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 609 KHKVGPNLHGFFGRKTGQAAGFSYSDANKA 520
           KH +  +L   FG K  +    SYS  NK+
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKS 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,981
Number of Sequences: 438
Number of extensions: 5050
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)