Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i03
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...   244   8e-66
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    30   0.31 
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   0.55 
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    27   2.2  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   5.1  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    26   6.8  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   6.8  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    25   9.0  

>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score =  244 bits (598), Expect = 8e-66
 Identities = 118/206 (57%), Positives = 146/206 (70%)
 Frame = -1

Query: 763 KELEEPFEVSQIGSSAMPYKRNPMRSERCCALARHLITLHANAANTHAVQWLERTLDDSA 584
           KE+EEPFE  QIGSSAM YKRNPMR ER C+ AR+++ L  NA NT +VQW ERTLDDS+
Sbjct: 273 KEVEEPFEAGQIGSSAMAYKRNPMRCERICSQARYIMNLIPNALNTASVQWFERTLDDSS 332

Query: 583 NRRIXXXXXXXXXXXXXXXXLNICQGLVVYPKVIARHIAQELPFMATENIIMAMVQAGGD 404
           NRR                 LN+  G+V+YPKVI +HI  ELPFMATENIIMAM + G  
Sbjct: 333 NRRSLLPEAFLFTDSVLKILLNVISGMVIYPKVIQKHIRAELPFMATENIIMAMTKHGAS 392

Query: 403 RQVCHEKIRVLSHEAGAQVKQHGRDNDLIERVKKDGYFAPIISQLDKILDASTFIGRAPE 224
           R  CHE+IRVLSH+AG  VK+ G DNDLIER+K   YFAPI  +LD +LDASTF+GRAPE
Sbjct: 393 RHECHEQIRVLSHQAGRVVKEEGGDNDLIERIKNTPYFAPIYDELDSLLDASTFVGRAPE 452

Query: 223 QVDEFLDEEVDPIIAKYADSLINVDK 146
           Q + F++++V   +A +  S+I  +K
Sbjct: 453 QTESFVNKDVSQALAPF-KSMITEEK 477


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 280 ISQLDKILDASTFIGRAPEQVDEFLD 203
           +S+ D +L    F+GRA  QVDEFL+
Sbjct: 140 LSRQDGLLKEHDFLGRAESQVDEFLE 165


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 760 ELEEPFEVSQIGSSAMPYKRNPM 692
           E+ EPF+ ++  SS MP KRNP+
Sbjct: 266 EVFEPFKANRGSSSTMPQKRNPI 288


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 704 LVRHGTRTNLGHFKRLLKLF 763
           + RHGTRT  G FK LL  F
Sbjct: 457 VTRHGTRTIFGAFKDLLNCF 476


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 143 WLVNIYKGICVFSDNRIDFFIQKLVHLFWSSTNERRSVQYLVQLGYNWGK 292
           +L N  K  C+  +  +   ++  +HL     +E  S+++L+Q G+++ K
Sbjct: 71  YLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNK 120


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 188 RIDFFIQKLVHLFW-SSTNERRSVQYLVQL 274
           R+D  I  L HLFW +S +E+  V  L +L
Sbjct: 458 RVDHAIGNLNHLFWAASISEKNEVFLLTEL 487


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 500 GVSESDRASYRSRTPFHGDGKYNNGYGPS 414
           G S S    + SRTP HG+  YN+G   S
Sbjct: 607 GPSYSGYGGFESRTPHHGN-TYNSGSAQS 634


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -1

Query: 370 SHEAGAQVKQHGRDNDLIERVKKDGYFAPIISQLDKILDASTFIGRAPEQVDEFLDEEVD 191
           +HEA + V  +  +  L+E V+ +  F  IIS+        TF     E   +   EE+ 
Sbjct: 125 THEASSSVFLNRHERQLLELVQNENTFTQIISEPS---HGITFESWEKEISIDGKTEEIS 181

Query: 190 PIIAKYAD 167
            ++ +Y D
Sbjct: 182 LLLEEYPD 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,571
Number of Sequences: 5004
Number of extensions: 51939
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)