Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i03
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1063 + 10974522-10974776,10975094-10975599,10976243-109763...    30   2.3  
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381...    30   2.3  
09_04_0395 + 17266560-17266593,17266656-17267199,17267297-172677...    29   3.1  
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    28   7.1  
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196           28   7.1  
03_03_0131 - 14706123-14706171,14706364-14706422,14706504-147067...    28   9.4  
01_06_0928 + 33085403-33089224                                         28   9.4  

>12_01_1063 +
           10974522-10974776,10975094-10975599,10976243-10976321,
           10976337-10976633,10976712-10976976,10977055-10977425
          Length = 590

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 359 CFMGEHSNLFVAHLT---VTSRLDH-SHYYIFRRHEREFLSDMTRD 484
           C   EH+ LF  HL    V  +++   H Y+ RR+ RE  SD+  D
Sbjct: 461 CMQWEHTGLFCPHLLRAFVHVQVEKIPHTYVLRRYSREAKSDVNFD 506


>06_03_1080 +
           27436389-27436742,27437573-27437804,27437911-27438159,
           27438467-27438517,27438676-27438936,27439019-27439071,
           27439201-27439315,27441666-27441920,27442423-27443480
          Length = 875

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 284 WGKIAVFLNAFNQIIISAMLLHLSPCFMG-EHSNLFVAHLTVTSRLDHS--HYYIFRRHE 454
           W +  V+  AF  +  S  LL+LS C     H       L++T+ L  S  HY    + +
Sbjct: 546 WNRWVVWAAAFTVVFGSVELLYLSACLAKVPHGGWLPLLLSLTTLLVMSTWHYGTAMKQQ 605

Query: 455 REFLSDMTRDHF 490
            E  + +  DHF
Sbjct: 606 HEVQNKVCLDHF 617


>09_04_0395 +
           17266560-17266593,17266656-17267199,17267297-17267766,
           17267855-17267990,17268097-17268168,17268228-17268276,
           17268292-17268360,17268609-17268680,17268769-17268786
          Length = 487

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +1

Query: 88  AVSSI---SCSGQINIKCLMPLAC 150
           A+SSI    CSG++NI CL+ LAC
Sbjct: 415 AISSILEKDCSGKVNIDCLIWLAC 438


>07_03_1591 +
           27967065-27967090,27967236-27968054,27984940-27985022,
           27985590-27985744,27985956-27986461,27986551-27986703,
           27987146-27987485,27987558-27987822,27987897-27988634,
           27989734-27989779,27989849-27990223,27991511-27991567,
           27991640-27992438
          Length = 1453

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 359 CFMGEHSNLFVAHLT---VTSRLDH-SHYYIFRRHEREFLSDMTRD 484
           C   EH+ +F  HL    V ++++   H Y+ RR+ ++  SD+  D
Sbjct: 776 CLQWEHTGMFCPHLLRAFVHAQVEKIPHMYVLRRYTKQAKSDVNYD 821


>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
          Length = 933

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 505 LVVYPKVIARHIAQ-ELPFMATENIIMAMVQAGGDRQVCHEKIRVLSHEAG 356
           L+++ K    HIA  EL F   E     ++ +    ++C EK+  L HE G
Sbjct: 508 LLIFSKTYKDHIAHLELFFRKVEQ--NGLILSKKKMEICKEKVNFLGHEIG 556


>03_03_0131 -
           14706123-14706171,14706364-14706422,14706504-14706770,
           14706857-14707114,14707207-14707629,14707942-14708514
          Length = 542

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 524 IKYLPRPGGVSESDRASYRSRTPFHGDGKYNNGY 423
           I Y P P GVSE  +   R   P   D  Y++GY
Sbjct: 455 IPYHPLPVGVSEGPKYLGRDTKPLGHDYPYSSGY 488


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 228 GALPMNVEASN---ILSNWDIIGAK*PSFLTRSIKSLSLPCC 344
           G+LP N E       L+ WD+   K  SFL   + SLS+  C
Sbjct: 783 GSLPSNTELFGRCMALTLWDVPNVKTLSFLPEGLTSLSIDRC 824


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,822,006
Number of Sequences: 37544
Number of extensions: 337322
Number of successful extensions: 1009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)