Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14i03
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 286 PIISQLDKILDASTFIGRAPEQVDEFLDEEVD 191
           P++ +++K +D + FI +  +  D+F   E D
Sbjct: 507 PLVREIEKTIDDARFIAQHAKNKDKFESVEED 538


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 536 STNTIKYLPRPGGVSESDRASYRSRTPFHGDGKYNNGYGPS 414
           +T T+    RP G ++ D      +   + DG Y N +  S
Sbjct: 9   TTATLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETS 49


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 466 ERYDARSLSDTPP 504
           E YD++S ++TPP
Sbjct: 528 EYYDSKSSTETPP 540


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 466 ERYDARSLSDTPP 504
           E YD++S ++TPP
Sbjct: 226 EYYDSKSSTETPP 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,542
Number of Sequences: 438
Number of extensions: 3724
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)