Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h23
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    28   0.67 
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    27   1.2  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   2.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   2.0  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   3.6  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   8.2  

>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 24  IINYHTYFFA*QFNVVTSGILNFPTLP 104
           ++ +HTY +A  F    S ILN  TLP
Sbjct: 213 LVGFHTYDYARHFLSACSRILNLSTLP 239


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +2

Query: 221 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI-------FCATRHFVRHTTLFTL 379
           FT  FLS +G SNT+ V+ + L    AD  ++R + +       F   R  + +TT   L
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLAL 206

Query: 380 N*DD 391
             DD
Sbjct: 207 EDDD 210


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 8   VILGCNYQLSHILFCITIQR--CH*WYSKLSNTSMSVFCS 121
           VIL C + +++  F + I    C   YS L+NT++  FCS
Sbjct: 109 VILQCQHVVANFKFIVIILHAMCS-VYSSLANTTLEEFCS 147


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 35  SHILFCITIQRCH*W-YSKLSNTSMSVFCS*FRSNTTTAKQSPLQHI 172
           S I+FC    R   W Y KLS+ S  +FC    SN   +    L  I
Sbjct: 491 SAIIFCCMALRRFPWKYPKLSDNSFRLFCMKQPSNDAESPSDILADI 537


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 161  LQHIAPSITL*FFKYVL*MYFTSRFLSA 244
            L H++P I+   +KY L   F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 130 PKSAAKHGHGSVGKFRIP 77
           PKS A +GHGSV    +P
Sbjct: 393 PKSQAAYGHGSVTYHEVP 410


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 288 FNIMHLTA-NVLLVPNALKKRDVKYIYNTYLKNYSVIE 178
           +N++  TA NV+     + + +++Y  N + K Y +IE
Sbjct: 724 YNMLRTTAVNVIRHLGVVGECNIQYALNPFTKEYCIIE 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,467
Number of Sequences: 5004
Number of extensions: 38922
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)