Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h23
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072...    29   1.5  
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192...    29   2.0  
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275...    27   8.0  

>03_05_0466 -
           24602715-24603964,24605762-24605944,24606381-24607286,
           24609446-24609516,24609737-24609846,24610073-24610108,
           24610211-24610278,24610655-24610760,24610850-24610997,
           24611091-24611218,24611319-24611454,24611924-24612072
          Length = 1096

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 96  TLPCPCFAADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 209
           T PCP  +      P+R  N  CNTS L  +C    ++
Sbjct: 29  TPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIH 66


>01_07_0061 +
           40818077-40818241,40818494-40818716,40819015-40819263,
           40819455-40819505,40819611-40819871,40819994-40820046,
           40820234-40820348,40820475-40820696,40821280-40822253
          Length = 770

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 282 IMHLTA--NVLLVPNA--LKKRDVKYIYNTYLKNYSVIEGAMC 166
           ++HL    NV+  PNA  LKK  V Y+YN   KN+   E   C
Sbjct: 713 VVHLLGETNVVAEPNADFLKKIIVDYVYNFIRKNFRQPEKITC 755


>03_05_0776 +
           27625122-27625415,27627226-27627273,27627455-27627514,
           27627633-27627802,27627901-27627973,27628096-27628161,
           27628262-27628345,27628681-27628758,27629009-27629092,
           27629835-27630137,27630227-27630397,27630971-27631161,
           27631284-27631686,27632246-27632497,27632577-27633077,
           27633181-27633278,27633400-27633499,27633722-27633867,
           27633973-27634138
          Length = 1095

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 173 APSITL*FFKYVL*MYFTSRFLSA 244
           AP+IT     YVL M+FT+ F+SA
Sbjct: 9   APAITKFLKPYVLKMHFTNNFVSA 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,650,421
Number of Sequences: 37544
Number of extensions: 237996
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)