Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14h23
(417 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT030403-1|ABO52822.1| 832|Drosophila melanogaster FI01115p pro... 28 4.3
BT010087-1|AAQ22556.1| 832|Drosophila melanogaster LD02463p pro... 28 4.3
AE013599-429|AAM68901.1| 832|Drosophila melanogaster CG1624-PC,... 28 4.3
AE013599-428|AAF59245.2| 832|Drosophila melanogaster CG1624-PB,... 28 4.3
AE013599-427|AAF59246.2| 832|Drosophila melanogaster CG1624-PA,... 28 4.3
AY060421-1|AAL25460.1| 651|Drosophila melanogaster LD39167p pro... 27 7.6
AL138972-2|CAB72285.1| 907|Drosophila melanogaster EG:BACR25B3.... 27 10.0
AJ487018-1|CAD31650.1| 4223|Drosophila melanogaster perlecan pro... 27 10.0
AE014298-409|AAN09080.1| 3215|Drosophila melanogaster CG33950-PB... 27 10.0
AE014298-408|AAN09079.1| 4223|Drosophila melanogaster CG33950-PD... 27 10.0
AE014298-407|AAF45786.3| 4179|Drosophila melanogaster CG33950-PA... 27 10.0
AE014298-406|AAN09078.1| 4228|Drosophila melanogaster CG33950-PE... 27 10.0
AE014298-405|AAN09077.1| 4117|Drosophila melanogaster CG33950-PC... 27 10.0
AE014298-404|AAF45787.2| 4629|Drosophila melanogaster CG33950-PF... 27 10.0
>BT030403-1|ABO52822.1| 832|Drosophila melanogaster FI01115p
protein.
Length = 832
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 115 LQLISVQHHNGQTIAIAT--HRTFNYTVIFQICIINVFHVPLFERVRNKQYISRQMHNVK 288
+ L+ V++ N +++ AT H + + +C+ + HV + +R N+ + ++K
Sbjct: 525 MDLVKVRNSNALSLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLK 584
Query: 289 NKLGRRRV 312
K GR+ V
Sbjct: 585 FKFGRKGV 592
>BT010087-1|AAQ22556.1| 832|Drosophila melanogaster LD02463p
protein.
Length = 832
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 115 LQLISVQHHNGQTIAIAT--HRTFNYTVIFQICIINVFHVPLFERVRNKQYISRQMHNVK 288
+ L+ V++ N +++ AT H + + +C+ + HV + +R N+ + ++K
Sbjct: 525 MDLVKVRNSNALSLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLK 584
Query: 289 NKLGRRRV 312
K GR+ V
Sbjct: 585 FKFGRKGV 592
>AE013599-429|AAM68901.1| 832|Drosophila melanogaster CG1624-PC,
isoform C protein.
Length = 832
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 115 LQLISVQHHNGQTIAIAT--HRTFNYTVIFQICIINVFHVPLFERVRNKQYISRQMHNVK 288
+ L+ V++ N +++ AT H + + +C+ + HV + +R N+ + ++K
Sbjct: 525 MDLVKVRNSNALSLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLK 584
Query: 289 NKLGRRRV 312
K GR+ V
Sbjct: 585 FKFGRKGV 592
>AE013599-428|AAF59245.2| 832|Drosophila melanogaster CG1624-PB,
isoform B protein.
Length = 832
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 115 LQLISVQHHNGQTIAIAT--HRTFNYTVIFQICIINVFHVPLFERVRNKQYISRQMHNVK 288
+ L+ V++ N +++ AT H + + +C+ + HV + +R N+ + ++K
Sbjct: 525 MDLVKVRNSNALSLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLK 584
Query: 289 NKLGRRRV 312
K GR+ V
Sbjct: 585 FKFGRKGV 592
>AE013599-427|AAF59246.2| 832|Drosophila melanogaster CG1624-PA,
isoform A protein.
Length = 832
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 115 LQLISVQHHNGQTIAIAT--HRTFNYTVIFQICIINVFHVPLFERVRNKQYISRQMHNVK 288
+ L+ V++ N +++ AT H + + +C+ + HV + +R N+ + ++K
Sbjct: 525 MDLVKVRNSNALSLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLK 584
Query: 289 NKLGRRRV 312
K GR+ V
Sbjct: 585 FKFGRKGV 592
>AY060421-1|AAL25460.1| 651|Drosophila melanogaster LD39167p
protein.
Length = 651
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 115 LQLISVQHHNGQTIAIAT--HRTFNYTVIFQICIINVFHVPLFERVRNKQYISRQMHNVK 288
+ L+ V++ N +++ AT H + + +C+ + HV + +R N+ + ++K
Sbjct: 525 MDLVKVRNSNALSLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLK 584
Query: 289 NKLGRR 306
K GR+
Sbjct: 585 FKFGRK 590
>AL138972-2|CAB72285.1| 907|Drosophila melanogaster EG:BACR25B3.10
protein.
Length = 907
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 120 ADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 209
ADF PQ RH ++QL C ++ Y
Sbjct: 809 ADFHQVPQSQLQRHREGENIQLQCTVTDQY 838
>AJ487018-1|CAD31650.1| 4223|Drosophila melanogaster perlecan protein.
Length = 4223
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 120 ADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 209
ADF PQ RH ++QL C ++ Y
Sbjct: 3223 ADFHQVPQSQLQRHREGENIQLQCTVTDQY 3252
>AE014298-409|AAN09080.1| 3215|Drosophila melanogaster CG33950-PB,
isoform B protein.
Length = 3215
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 120 ADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 209
ADF PQ RH ++QL C ++ Y
Sbjct: 3117 ADFHQVPQSQLQRHREGENIQLQCTVTDQY 3146
>AE014298-408|AAN09079.1| 4223|Drosophila melanogaster CG33950-PD,
isoform D protein.
Length = 4223
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 120 ADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 209
ADF PQ RH ++QL C ++ Y
Sbjct: 3223 ADFHQVPQSQLQRHREGENIQLQCTVTDQY 3252
>AE014298-407|AAF45786.3| 4179|Drosophila melanogaster CG33950-PA,
isoform A protein.
Length = 4179
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 120 ADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 209
ADF PQ RH ++QL C ++ Y
Sbjct: 3179 ADFHQVPQSQLQRHREGENIQLQCTVTDQY 3208
>AE014298-406|AAN09078.1| 4228|Drosophila melanogaster CG33950-PE,
isoform E protein.
Length = 4228
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 120 ADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 209
ADF PQ RH ++QL C ++ Y
Sbjct: 3117 ADFHQVPQSQLQRHREGENIQLQCTVTDQY 3146
>AE014298-405|AAN09077.1| 4117|Drosophila melanogaster CG33950-PC,
isoform C protein.
Length = 4117
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 120 ADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 209
ADF PQ RH ++QL C ++ Y
Sbjct: 3117 ADFHQVPQSQLQRHREGENIQLQCTVTDQY 3146
>AE014298-404|AAF45787.2| 4629|Drosophila melanogaster CG33950-PF,
isoform F protein.
Length = 4629
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 120 ADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 209
ADF PQ RH ++QL C ++ Y
Sbjct: 3629 ADFHQVPQSQLQRHREGENIQLQCTVTDQY 3658
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,308,217
Number of Sequences: 53049
Number of extensions: 433956
Number of successful extensions: 1049
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1251032760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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