Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h23
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    31   0.25 
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    29   1.0  
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    28   2.4  
Z96048-6|CAE17841.1|  327|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81132-15|CAE17969.1|  327|Caenorhabditis elegans Hypothetical p...    27   4.1  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    27   4.1  
AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine re...    27   4.1  
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    27   7.2  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   7.2  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   7.2  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   7.2  
Z98866-22|CAE18019.1|  162|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z82059-9|CAB04875.1|  292|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF129111-1|AAD37121.1|  292|Caenorhabditis elegans cell division...    26   9.5  
AF016418-8|AAK18897.1|  330|Caenorhabditis elegans Serpentine re...    26   9.5  

>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 321 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 202
           GL+   S   IFN   L A++LL+ N +K    K I+N +
Sbjct: 12  GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -1

Query: 348 CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNY-SVIEG 175
           C   + INL  +N    +F IF I+H  +NVLLV          +IY  + + Y +V+  
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLV---FYSASTFFIYLIFSEKYRNVLST 316

Query: 174 AMCC-NGDCLAVVVLDRNQLQNT 109
            + C N D L V    R   + T
Sbjct: 317 CVTCRNTDELTVSSRGRQNTKTT 339


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 49  LHNNSTLSLVVF*TFQHFHVRVLQLISVQHHNGQTIAIATHRTFNYTVIFQICIINVFHV 228
           LHN + L   +    Q   + V++  S     GQ   I+ +  FN+  +  IC +     
Sbjct: 318 LHNVNDLERALLECVQPGSIIVMR-DSFMERFGQQEEIS-NALFNHYKVKSICDV----W 371

Query: 229 PLF-ERVRNKQYISRQMHNVKN 291
           P F ER RNKQYI  +M+ V N
Sbjct: 372 PDFNERERNKQYIKTEMNQVPN 393


>Z96048-6|CAE17841.1|  327|Caenorhabditis elegans Hypothetical
           protein F57A10.6 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 49  LHNNSTLSLVVF*TFQHFHVRVLQLISVQHHNGQTIA-IATHRT-FNYT 189
           L NN +LS  +F       +R  QL++ ++    T+A IA H T  N+T
Sbjct: 79  LKNNDSLSAFIFNLAHQDELRKYQLMNCRYDGDPTVAEIAEHNTPLNFT 127


>Z81132-15|CAE17969.1|  327|Caenorhabditis elegans Hypothetical
           protein F57A10.6 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 49  LHNNSTLSLVVF*TFQHFHVRVLQLISVQHHNGQTIA-IATHRT-FNYT 189
           L NN +LS  +F       +R  QL++ ++    T+A IA H T  N+T
Sbjct: 79  LKNNDSLSAFIFNLAHQDELRKYQLMNCRYDGDPTVAEIAEHNTPLNFT 127


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 382 IECEECGVTHKMPGCAKNKPGSI*LGVGRVY 290
           I+C +CG   K+P  AKN    + + V  +Y
Sbjct: 21  IKCHQCGGAEKIPKFAKNALAKLNISVDSLY 51


>AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine
           receptor, class h protein270 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 348 ILCVTPHSSHSIKTIMLN--FWQIL 416
           ILC TP S  S+K  M N  FW +L
Sbjct: 39  ILCKTPDSMKSVKWSMFNLHFWSVL 63


>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
            W09D10.2 protein.
          Length = 1335

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 175  TFNYTVIFQICIINVFHVPLF 237
            TF + ++ Q+ I+N FH+ LF
Sbjct: 1176 TFGHLLVTQLIIVNTFHLALF 1196


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 205 CIINVFHVPLFERVRNKQYISRQMH 279
           CI N+  +P+F+  R K  IS ++H
Sbjct: 183 CITNINLLPMFKAAREKNLISDEIH 207


>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
           protein F14B4.3 protein.
          Length = 1127

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 169 VLQWRLFGRCGVGPKSAAKHGHGSVGKFRIPL 74
           ++QWR+     +G K A++HG   +  F  P+
Sbjct: 842 LIQWRIERNPIIGDKFASRHGQKGINSFLWPV 873


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 81  ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 179
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 66  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 98


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 81  ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 179
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 83  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 115


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 81  ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 179
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 195 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 227


>Z98866-22|CAE18019.1|  162|Caenorhabditis elegans Hypothetical
           protein Y49E10.27 protein.
          Length = 162

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 409 CQKFNMIVLIECEECG--VTHKMPGC 338
           C +FNM+V      CG   T K+PGC
Sbjct: 91  CHRFNMVVFEHSVFCGDSRTCKIPGC 116


>Z82059-9|CAB04875.1|  292|Caenorhabditis elegans Hypothetical
           protein T27E9.3 protein.
          Length = 292

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 334 LRNQAFCASHHTLHTQLR 387
           LR  +FC +HH LH  L+
Sbjct: 111 LRGLSFCHAHHVLHRDLK 128


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 33  YHTYFFA*QFNVVTSGILNFPTLPCPCFAADFGPTPQRPNN 155
           YH    A Q N     +L+   LP P  + DF  TP+ PN+
Sbjct: 591 YHFNRKAFQVNQDDKIVLDAEALPLPIDSDDFDLTPRGPNS 631


>AF129111-1|AAD37121.1|  292|Caenorhabditis elegans cell division
           protein kinase 5 protein.
          Length = 292

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 334 LRNQAFCASHHTLHTQLR 387
           LR  +FC +HH LH  L+
Sbjct: 111 LRGLSFCHAHHVLHRDLK 128


>AF016418-8|AAK18897.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein169 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 135 TPQRPNNRHCNTSHLQLHCNFSNMYYKCISRP 230
           TP +  N       L L C FS+ Y+ C++ P
Sbjct: 41  TPSKMQNVRNTMFLLHLVCAFSDFYFSCLAIP 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,579,657
Number of Sequences: 27780
Number of extensions: 229340
Number of successful extensions: 640
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)