Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h19
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549...    30   1.6  
11_01_0464 + 3597568-3600244,3600345-3600742                           30   1.6  
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189...    29   2.8  
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28...    28   6.5  
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697...    27   8.5  
02_05_0680 - 30824652-30826010                                         27   8.5  

>12_02_0942 -
           24653834-24654046,24654346-24654482,24654626-24654959,
           24655067-24655153,24655254-24655580
          Length = 365

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 448 LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFXRPQKRSLGRSLKRLGSNDVIFS 269
           L ++M++++   +    N   C+S+ V D+ NN  +  RP + S    +    + D +  
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVLV 339

Query: 268 SD 263
            D
Sbjct: 340 DD 341


>11_01_0464 + 3597568-3600244,3600345-3600742
          Length = 1024

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 403 PSNPQLCHSLAVCDVGNNEFAFXRPQKRSLGRSLKRLGSNDVIFSSDYVPNSM-NVLNKV 227
           PS     H+L V ++  N F+   P      +SL++L   D  F+   +P+S+ N+ N V
Sbjct: 384 PSGLTNLHNLVVIELSGNRFSGVLPDWLGALKSLQKLTVGDNNFTG-LIPSSLFNLTNLV 442

Query: 226 KEAIPRNKFKAK 191
              +  NKF  +
Sbjct: 443 HLFLYSNKFSGQ 454


>10_08_0704 -
           20018477-20018542,20018693-20018704,20018731-20018927,
           20018928-20018999,20019159-20021289
          Length = 825

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -1

Query: 403 PSNPQLCHSLAVCDVGNNEFAFXRPQKRSLG-RSLKRLGSNDVIFSSDYVPNSMNVLNKV 227
           PS+ ++C +L   D+GNN F    P     G  SLK L      F+ + +P+ ++ L+++
Sbjct: 577 PSSLEMCKALITLDIGNNRFFGGIPPWIGKGLLSLKFLSLKSNNFTGE-IPSELSNLSQL 635

Query: 226 K 224
           +
Sbjct: 636 Q 636


>10_01_0021 -
           281130-281224,281758-281842,281916-281971,282408-282584,
           282686-282805,283004-283096,283548-283668,283772-283804,
           284001-284082,286600-286739
          Length = 333

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 214 PRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARM 98
           P N  +  HNR ++L++     L N  G   T RQ+  M
Sbjct: 99  PPNAIQHLHNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137


>07_03_0006 +
           12268852-12269146,12269362-12269487,12269536-12269753,
           12269918-12270292,12270376-12270610,12270698-12270861
          Length = 470

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = -1

Query: 370 VCDVGNNEFAFXRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPR------ 209
           V D GNN F    P K  L R ++    N     +       +V N++K AIP+      
Sbjct: 285 VYDNGNNTFRTIFPSKVELQRMVEWGQVNTKFVKAKMEMKERDVGNEIKYAIPKIVDMKL 344

Query: 208 -NKFKAKHNRITLLEDYTREELMNVI 134
             ++ A H ++ +L+     E ++VI
Sbjct: 345 TKRYDAAHLQVLVLDHSLIPESVDVI 370


>02_05_0680 - 30824652-30826010
          Length = 452

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 478 CENARREXAQLANRMADIAQDVIAKPSNPQ 389
           C+N   E    AN M D   +++AKP +PQ
Sbjct: 257 CDNQCLEAMSKANAMYDALVNLVAKPVSPQ 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,114
Number of Sequences: 37544
Number of extensions: 253194
Number of successful extensions: 780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)