Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14h19
(595 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 25 0.74
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 21 6.9
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 21 6.9
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 6.9
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 6.9
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 6.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.1
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 9.1
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 9.1
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 9.1
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 21 9.1
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 9.1
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 9.1
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 9.1
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 24.6 bits (51), Expect = 0.74
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 212 AQQVQSQAQPHHVAGRLHARGANERDRLHYD 120
+Q ++ Q + G LH+ + DRLHY+
Sbjct: 686 SQYIREQTESDDKEGYLHSVVSGALDRLHYE 716
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 61 HIKIFIARCANCSCA 105
H ++ RCANC+ A
Sbjct: 39 HSNVYQYRCANCTYA 53
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = -3
Query: 233 QSKGSHTAQQVQSQAQPHH 177
Q + H AQ + Q HH
Sbjct: 793 QQRHQHAAQMIYGHQQSHH 811
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 277 IFSSDYVPNSMNVLNKVKEAIPRN 206
+F S Y P MN+L + E R+
Sbjct: 365 VFLSLYQPQGMNILGDLIEGTGRS 388
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 6.9
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +1
Query: 421 AQCPPCGWPAAPFXGARFRN 480
A PC W A P+ G N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 6.9
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +1
Query: 421 AQCPPCGWPAAPFXGARFRN 480
A PC W A P+ G N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 6.9
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +1
Query: 421 AQCPPCGWPAAPFXGARFRN 480
A PC W A P+ G N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 9.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 125 YDRPTNCAHEQ 93
YD P NCA E+
Sbjct: 1807 YDDPANCAPEE 1817
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 304 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 221
++R G IF + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 304 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 221
++R G IF + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 304 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 221
++R G IF + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 304 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 221
++R G IF + + N + +NK+KE
Sbjct: 152 IRRTGEGSKPIFEREEIKNVLTKINKIKE 180
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 304 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 221
++R G IF + + N + +NK+KE
Sbjct: 168 IRRTGEGSKPIFEREEIKNVLTKINKIKE 196
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 304 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 221
++R G IF + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 304 LKRLGSNDV-IFSSDYVPNSMNVLNKVKE 221
++R G IF + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,194
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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