Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h18
         (564 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145608-1|AAD38583.1|  674|Drosophila melanogaster BcDNA.GH0275...    29   5.7  
AE014298-2816|AAF48933.1| 1513|Drosophila melanogaster CG12359-P...    29   5.7  
BT023872-1|AAZ86793.1|  334|Drosophila melanogaster GH23213p pro...    28   7.6  
AE014134-1|AAO41164.1|  468|Drosophila melanogaster CG11023-PA p...    28   7.6  

>AF145608-1|AAD38583.1|  674|Drosophila melanogaster BcDNA.GH02751
           protein.
          Length = 674

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 261 IFDPMIPMQFQIRDPAPYVPIQIKNSQRSQCDTTSKTNTHQLYRQDXLR 407
           IF+P +  Q ++R+ AP+VP    + + SQ    +  ++  +   D +R
Sbjct: 107 IFNPPVYTQHRVRNDAPHVPTPFDDEESSQRLANAGPSSRPMTYSDAVR 155


>AE014298-2816|AAF48933.1| 1513|Drosophila melanogaster CG12359-PA
            protein.
          Length = 1513

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 261  IFDPMIPMQFQIRDPAPYVPIQIKNSQRSQCDTTSKTNTHQLYRQDXLR 407
            IF+P +  Q ++R+ AP+VP    + + SQ    +  ++  +   D +R
Sbjct: 946  IFNPPVYTQHRVRNDAPHVPTPFDDEESSQRLANAGPSSRPMTYSDAVR 994


>BT023872-1|AAZ86793.1|  334|Drosophila melanogaster GH23213p
           protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 261 IFDPMIPMQFQIRDPAPYVP 320
           IF+P +  Q Q+R+ APY+P
Sbjct: 65  IFNPPVYTQHQVRNEAPYIP 84


>AE014134-1|AAO41164.1|  468|Drosophila melanogaster CG11023-PA
           protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 261 IFDPMIPMQFQIRDPAPYVP 320
           IF+P +  Q Q+R+ APY+P
Sbjct: 15  IFNPPVYTQHQVRNEAPYIP 34


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,101,263
Number of Sequences: 53049
Number of extensions: 446576
Number of successful extensions: 945
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)