Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h18
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GA...    29   2.3  
AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GA...    29   2.3  
AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion def...    29   2.3  
Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z92785-5|CAB54232.2|  300|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AL021504-3|CAB54474.2|  300|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GABA
           receptor EXP-1A protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -2

Query: 302 VSNLELHRYHWIKDVIFLS*YIDEFICFGCILNYELYFKLXLISI 168
           ++   +HR+HWI  ++F       F+ F C+  + +Y  L ++S+
Sbjct: 478 ITQRTMHRFHWISQMLFFF----GFVIF-CLFYFLIYPNLHIVSV 517


>AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GABA
           receptor EXP-1B protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -2

Query: 302 VSNLELHRYHWIKDVIFLS*YIDEFICFGCILNYELYFKLXLISI 168
           ++   +HR+HWI  ++F       F+ F C+  + +Y  L ++S+
Sbjct: 484 ITQRTMHRFHWISQMLFFF----GFVIF-CLFYFLIYPNLHIVSV 523


>AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion
           defective (defecation)protein 1 protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -2

Query: 302 VSNLELHRYHWIKDVIFLS*YIDEFICFGCILNYELYFKLXLISI 168
           ++   +HR+HWI  ++F       F+ F C+  + +Y  L ++S+
Sbjct: 484 ITQRTMHRFHWISQMLFFF----GFVIF-CLFYFLIYPNLHIVSV 523


>Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical
           protein F08G12.3 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 208 SIQPKHINSSIYYDKNI 258
           S+QP H +S  YYD+NI
Sbjct: 61  SVQPNHTSSPAYYDENI 77


>Z92785-5|CAB54232.2|  300|Caenorhabditis elegans Hypothetical
           protein F31E9.6 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 270 PMIPMQFQIRDPAP---YVPIQIKNSQRSQCDTTSKTNTHQ 383
           P+ P+Q + R PAP    +P +++ ++R + + T  +   Q
Sbjct: 253 PLFPVQIRARPPAPTRTIIPSEVQETERVKLEPTDNSYEEQ 293


>AL021504-3|CAB54474.2|  300|Caenorhabditis elegans Hypothetical
           protein F31E9.6 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 270 PMIPMQFQIRDPAP---YVPIQIKNSQRSQCDTTSKTNTHQ 383
           P+ P+Q + R PAP    +P +++ ++R + + T  +   Q
Sbjct: 253 PLFPVQIRARPPAPTRTIIPSEVQETERVKLEPTDNSYEEQ 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,926,800
Number of Sequences: 27780
Number of extensions: 232189
Number of successful extensions: 454
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)