Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14h18
(564 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 23 2.1
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 23 2.8
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 23 2.8
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 4.9
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 4.9
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 8.6
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 8.6
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 8.6
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 23.0 bits (47), Expect = 2.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 483 AWLSLVVVSIVVPTGLLLL 539
A LSLVVV++ + TG LL
Sbjct: 60 AMLSLVVVTVAISTGEWLL 78
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.6 bits (46), Expect = 2.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 292 WNCIGIIGSKM*YFYHNILMNLYVL 218
WN +G+ G+ + YF I + VL
Sbjct: 442 WNVLGVQGALLSYFIEPIYFHSIVL 466
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 22.6 bits (46), Expect = 2.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 250 KNITSLIQ*YLCSSRLETPLLTFQ 321
+ ++S+ Y C R E P+++FQ
Sbjct: 644 EEVSSIETNYECGLRFEDPMISFQ 667
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 4.9
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = +3
Query: 534 LLGLAPCCWF 563
++G PCCW+
Sbjct: 482 MIGYYPCCWW 491
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 4.9
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = +3
Query: 534 LLGLAPCCWF 563
++G PCCW+
Sbjct: 535 MIGYYPCCWW 544
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 88 LSNNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 88 LSNNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 88 LSNNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 88 LSNNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 88 LSNNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 88 LSNNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 88 LSNNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 88 LSNNYNYNNNYNNYNKHNYNKLYYNIN 114
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 88 LSNNYNYNNNYNNYNKHNYNKLYYNIN 114
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 321 LSNNYNYNNNYNNYNKHNYNKLYYNIN 347
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 175 ISXSLKYNS*FSIQPKHINSSIYYDKN 255
+S + YN+ ++ KH + +YY+ N
Sbjct: 321 LSNNYNYNNNYNNYNKHNYNKLYYNIN 347
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,231
Number of Sequences: 438
Number of extensions: 3320
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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