Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h17
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    56   4e-09
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    28   0.95 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   1.7  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    27   2.9  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    26   3.8  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   8.8  

>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 28/92 (30%), Positives = 44/92 (47%)
 Frame = -2

Query: 395 GDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSKRLFSFNQ 216
           G+ + L  +PIGT++H +   P Q      +AG+S  I+       IV++ S        
Sbjct: 165 GNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAFDGKYAIVRLQSGEERKILD 224

Query: 215 LCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRP 120
              A +G +SN+      +G   R+RWLG RP
Sbjct: 225 TSFATIGVVSNIYWQHRQLGKAGRSRWLGIRP 256


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 233 LFSFNQLCMAVVGRLSNVLHGSTPIGS 153
           LF+ +Q C  +     N++H S PIGS
Sbjct: 574 LFTLDQTCNIIAKLADNLIHPSVPIGS 600


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 356 IVHCVEKEPGQGGLYIHAA---GTSGTIVRKQDDRVIVQMPSKRL 231
           I+ C++K P  G +++H +   G +GT +       I+Q+P   L
Sbjct: 613 IIRCIDKVPNDGPMFVHCSAGVGRTGTFIAVDQ---ILQVPKNIL 654


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 197 GRLSN--VLHGSTPIGSPQRNRWLGNRPRSGLWQR 99
           G +SN  +++ STP+G+ QR  +L  R     WQ+
Sbjct: 29  GSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQK 63


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 189 VQRSSRQHTYRVPTAEQVAREPASLRSVAAEVWSSRKKDQTP 64
           +QR S  + +  P A++  R+P+S   V A     R    TP
Sbjct: 99  LQRHSPAYRFSTPAAKRPRRQPSSFLDVHASNTRKRGSPDTP 140


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 92  GRHGRKIKPPKPVKQICNPSEHQI 21
           GRH + I P K V ++C     QI
Sbjct: 276 GRHSKSINPQKQVCRLCKSQIKQI 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,017
Number of Sequences: 5004
Number of extensions: 51384
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)