Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14h17
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703...    31   0.74 
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612...    29   3.9  
03_05_0315 - 23040153-23040325,23040717-23041051,23041201-23041289     28   5.2  
10_07_0138 + 13325418-13325954                                         28   6.9  
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855...    27   9.1  
01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232...    27   9.1  

>04_04_1358 +
           32869222-32869306,32869947-32870008,32870301-32870393,
           32870640-32870761,32873139-32873167,32873586-32873891,
           32873977-32874035,32874148-32874279,32874414-32874455,
           32874560-32875093,32875189-32875379,32875538-32876027,
           32876273-32876335,32876704-32876805,32876895-32877215,
           32877294-32877386,32877484-32877585,32877718-32877822,
           32877933-32878066,32878429-32878612,32879226-32879357,
           32879447-32879559,32879628-32879709,32880328-32881992
          Length = 1746

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 128 NRPRSGLWQRKSGRHGRKIKPPKPVKQICNPSEHQIAA 15
           N+PR G  + KS +H R   PP P     +P  H   A
Sbjct: 158 NKPRDGA-KHKSSKHARPATPPSPPALAASPDAHGAGA 194


>03_02_0171 +
           6126685-6127107,6127237-6127581,6127701-6127997,
           6129763-6129990,6130716-6131036
          Length = 537

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -2

Query: 176 HGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPSEHQIAAHNTK 3
           H   P  S QR+ W G    +G  +  +  HGR      P K   +  +H+I +   K
Sbjct: 306 HSRKPSASSQRS-WSGGSTNAGASRDTAASHGRSRHTVAPEKHHHHHQQHKIMSEECK 362


>03_05_0315 - 23040153-23040325,23040717-23041051,23041201-23041289
          Length = 198

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 119 RSGLWQRKSGRHGRKIKPPKPVKQICNPSEHQI 21
           R G  Q++ GRH +   PP  V Q+  P E+++
Sbjct: 151 RMGRHQKRMGRHQKGSTPPSRVVQLELPEEYRV 183


>10_07_0138 + 13325418-13325954
          Length = 178

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 396 RRCLRI--RSFTYRNDSALRRERTWSRRSIHTRGRHVW 289
           RRC R   RS  +R+  + R  R+W RR    R R +W
Sbjct: 85  RRCSRRWRRSRRWRSRCSRRWRRSWRRRRCSRRWRRLW 122


>06_03_0077 +
           16284106-16284128,16284552-16284795,16285490-16285591,
           16286347-16287057
          Length = 359

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 131 GNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPSEHQIAA 15
           G+ P   +WQ +  RH   ++PP+  ++  +P   Q++A
Sbjct: 116 GDDPYGSVWQAQGARHQVLVRPPRSPRE--DPMATQLSA 152


>01_06_1504 +
           37821676-37821778,37821855-37822072,37822713-37823242,
           37824040-37824483,37824923-37825616
          Length = 662

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 176 HGSTPIGSPQRNRWLGNRPRSGLWQRKSGR 87
           HG  P G      W  ++ RSG  QR  GR
Sbjct: 356 HGERPAGGGTEVAWASSQGRSGGMQRAGGR 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,487,644
Number of Sequences: 37544
Number of extensions: 373781
Number of successful extensions: 1009
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)